Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1780 ATGGTAGTCCCTAACCCAAACAATAACCCCAGCAATCGAACTCACTATGCGCTCTCCTGCCGCAAAATCGCAGTCGAGAAGAAGGGCTTTGAACTCGAAGGGTCTTCTCACAACCATAGAAGCAAAGAACAGACGTTTCTCTACCGGTTTCGAGCGATTTGTGGATACAGAAGGATGCTTCCGCAGCGGGTGAAGAAGACCATAACTGATAATCCAAAGAAGCTGGCCAACTTGATCGACCTTGCAAATCTTCCCTCGACTCTTCGAGAGTTTGTGGGTCAATCTCAAACTTCTCGGTTAGGCTGTTTTTTGCGGGTTTGGTCCTACATCAAAACCAATAATCTCCAGGATGCAACCAATAAGAATGTGGTGAACTGTGATGAGAAGTTGAAAAGTATTCTGTTCGGAAGATCTCATGTCGAGTTGGCAGAACTTCCTGAACTAATCAAGCTGCATTTTCCAAAAGCGCCCAAGTGA 477 0.457 MVVPNPNNNPSNRTHYALSCRKIAVEKKGFELEGSSHNHRSKEQTFLYRFRAICGYRRMLPQRVKKTITDNPKKLANLIDLANLPSTLREFVGQSQTSRLGCFLRVWSYIKTNNLQDATNKNVVNCDEKLKSILFGRSHVELAELPELIKLHFPKAPK 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1780 158 SMART swib_2 78 158 IPR019835 -
Alju08g1780 158 ProSiteProfiles SWIB/MDM2 domain profile. 77 155 IPR003121 -
Alju08g1780 158 SUPERFAMILY SWIB/MDM2 domain 74 156 IPR036885 -
Alju08g1780 158 Pfam SWIB/MDM2 domain 83 153 IPR003121 -
Alju08g1780 158 CDD SWIB-MDM2_like 88 153 - -
Alju08g1780 158 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 63 158 - -
Alju08g1780 158 Gene3D SWIB/MDM2 domain 77 158 IPR036885 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Alju08g1780 SWIB 2e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1780 08 15115629 15118673 Alju08g1780 08 15115629 15118673 ECH