Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1484 ATGGGCTATTACTCATTTCTTTTTAGACCTGCTAAGCAATGGGCCATTGACTGTTATCCACTAATTATCGCAGTTTTAGTTTGGCAAAGCACCGATCCGCGGTACTTATGTTGTCGTTTTTATCCACGGGAGGATGTGGCAGTGAAGGAGAAGATGCTCCAGCTTCACTCTTGTACATGTCGCGGTGCTTTCGCAGCGAAATCATTTCGTACTTCACCTATTTTCTTCTTCAGGGGTCGGAATCTTAAGTCTCCTCTCGGTGTTGAGAGAACAATTAGAGGCTGTTGTGGTTTCGACGGAGATTTAGGCTCCGATGGTGAGCAAGAGCTGGTCTTGGTTAATAGGACGAATTACGCCGGCGTGCGGTTGGAGGAGACTGTCGATGCCGGTTCAGGAAAGCTCAGGCTCGATTCTTGGATCTCTTCCCGCATCAAGGGTATAAGTAGGGCTCGTGTGCAATCAAGTATTAGAGCGGGGCTTGTTCATGTCAACGGCCGTGCTGTTGATAAGGTTTCTTTCAATGTCAAGACTGGGGATAAGATCAATTGCATGATTTCAGAGTTACAGCAGTTGAGAGCCGAGCCAGAACATATGGAGTTGGATATTGTTTATGAAGATGAGCATTTACTAGTAATTAATAAACCTGCGCACATGGTTGTGCATCCAGCACCTGGAAATGCATCTGGTACTCTTGTCAGTGGCATTCTTCACCATTGCAACCTTCCAAATGTTGAGATTCCAAACCAGGAAGCTCTTTCTGAGACTGAAGATTCTGATGACGATTTTGATAGCTACTCTATTTGTTCAAATTCCAGTGAAGGTTTACTACCACATTCCAGCACGTGTGGAGCATCAGTCCGCCCAGGGATTGTGCATAGGCTGGACAAAGGCACTAGTGGATTGCTTGTTGTGGCAAAGGATGAACATTCCCATAAACATTTATCAGAGCAATTCAAGCTACGTACTATCAAGAGGGTGTATGTCAGTCTCACTATTGGGGTTCCCTCTCCAACTGCTGGACGTGTCGAGGTTCCAGTTGGTCGTGACCCTAATAATCGGATTCGAATGACTGCTGTAGCTGGATCAATTAATTCTAGAAAAGCCCGTTATGCTGCTAGTAGGTACAAAGTAAGTGAGATACTTGCTAAGGGTGCTTGTGCATTGCTTGAATGGAAGTTAGAAACCGGGCGTACTCATCAGATACGTGCACACACCAAGTATCTAGGTGTTCCTCTACTGGGTGATGAGGTGTACGGAGGGACGAAGAGCATGGCCTTATCACTACTTCAGCCCCGAATACCGACGAGCTTGCGTGGCAAAATTGTACAAATGGTTTCTCAGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTTGGGTTTCGGCATCCCCATACAGGAGAGCAGTTGCATTTTACATGTCAACCCCCTGCAGACTTTGATCAGATTTTGAGCCAGCTTCGGACAATTGGCTGTGAAAGGCTATCTTCCTTTTCATGA 1497 0.4609 MGYYSFLFRPAKQWAIDCYPLIIAVLVWQSTDPRYLCCRFYPREDVAVKEKMLQLHSCTCRGAFAAKSFRTSPIFFFRGRNLKSPLGVERTIRGCCGFDGDLGSDGEQELVLVNRTNYAGVRLEETVDAGSGKLRLDSWISSRIKGISRARVQSSIRAGLVHVNGRAVDKVSFNVKTGDKINCMISELQQLRAEPEHMELDIVYEDEHLLVINKPAHMVVHPAPGNASGTLVSGILHHCNLPNVEIPNQEALSETEDSDDDFDSYSICSNSSEGLLPHSSTCGASVRPGIVHRLDKGTSGLLVVAKDEHSHKHLSEQFKLRTIKRVYVSLTIGVPSPTAGRVEVPVGRDPNNRIRMTAVAGSINSRKARYAASRYKVSEILAKGACALLEWKLETGRTHQIRAHTKYLGVPLLGDEVYGGTKSMALSLLQPRIPTSLRGKIVQMVSQLDRPCLHALTLGFRHPHTGEQLHFTCQPPADFDQILSQLRTIGCERLSSFS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1484 498 SUPERFAMILY Alpha-L RNA-binding motif 133 221 - -
Alju08g1484 498 CDD S4 135 213 - -
Alju08g1484 498 Pfam S4 domain 135 181 IPR002942 GO:0003723
Alju08g1484 498 Gene3D Pseudouridine synthase 201 250 - -
Alju08g1484 498 Gene3D Pseudouridine synthase 262 490 - -
Alju08g1484 498 CDD PseudoU_synth_RluA_like 209 460 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju08g1484 498 Gene3D - 119 190 IPR036986 GO:0003723
Alju08g1484 498 ProSitePatterns Rlu family of pseudouridine synthase signature. 291 305 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju08g1484 498 FunFam RNA pseudouridine synthase 2 chloroplastic 121 189 - -
Alju08g1484 498 ProSiteProfiles S4 RNA-binding domain profile. 134 207 - -
Alju08g1484 498 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 138 485 - -
Alju08g1484 498 SUPERFAMILY Pseudouridine synthase 194 487 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju08g1484 498 SMART s4_6 134 192 IPR002942 GO:0003723
Alju08g1484 498 Pfam RNA pseudouridylate synthase 208 405 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1484 08 11530501 11534307 Alju08g1484 08 11530501 11534307 ECH