Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1482 ATGGCCTTCATCAATTTCAGATTACGCTTCTGCCATTCTCTCACTCGCACTTCCAAATTCTATTCTTCTTCTTCTTCAGCTTTAGTTTCAGAAGCTACCCTTCAACAAGACGTCGATGAAACACCCCAAGGCACTTCCTTATCCCCTGAAGAAACCCTTATAGCTGAACATTTTCATGCTCTGATCAAAGACCATTACCGCAACAACCCTAACCCTAACGCCGCCCCACCCACTCCTCATTTCACAATACCCGATCTCTCCCTCGACTTCTCTCGAATCACCTCCCACCAACCTCTTTCCCCCTCCGTCGTCCGCCGCGTGCTTGAGAAATGCGGCGGCGTCCGCCACGGTATCCCTTTCCTCCAATCCCTTGCTTTCTTCAATTGGGCCACCACGTGCGAGGGTTTTCCCACCACGCCAGAGCCCTATATCGAGATGATTGACCTCGCCGGGAAGCTCAGGCACTTCGATTTAGCATGGCATCTCATCGATTTGATGAAAGCCAGAGGTGTCCATATAACCGTCGAGACATTCTCTTTCCTCGTCCGGCGATACGTGAGAGCAGGATTGGCTGCGGAGGCCGTCCACACTTTTAACCGTATGGAAGATTATGGCTGTACGCCTGATAAGATTGCTTTCTCAATTGTCATTAGTATTTTGTGCAAGAAGAGAAGGGCAAGCGAAGCTCAGTCTTTCTTCGATAGCTTGAAGCACAGATTTGAGCCCGATGTCATAGTGTACACCAACCTGGTTCGTGGTTGGTGCCGAGCAGGTAATATTTCAGAGGCCGAGCGCGTGTTTGCGGAGATGAAGATGGCTGGTATCAAACCCAATGTTTATACTTACAGCATTGTGATTGATTCACTATGTCGTTGTGGACAAATCACTCGCGCGCATGATGTTTTCTCTGAGATGATAGATGTGGGTTGTGATCCAAATTCCATTACTTTCAACAATCTCATGCGTGTTCATGTCAAAGCTGGAAGAACTGAGAAGGTATTGCAAGTTTATAATCAGATGAAGAGACTTGGATGTCCTCCTGATACTATCACCTATAATTTCCTCATAGAGACGCATTGTAAAGATGATAATCTTGAGGAAGCTATCAAGGTTCTCAACTCAATGGTCAAGAAAGGGTGTGCTCCTAATGCTTCTACTTTCAATCTTATATTCAGATGCGTAGCTAAGTTACATGATGTAAATGGGGCTCATAGGCTGTATGCTAAAATGAAGGAACTCAAGTGTGAGCCTAATACCCTGACCTACAATATAATAATGGGCATGTTCACTCATGCGAGATCTACTGATATGGTGCTCAAGATGAAGAAGGAAATGGATGAGAATGAAGTGGAGCCTAATGTAAATACTTACAGATTGTTGATCACAATGTACTGTGGAATGGGGCACTGGAACAATGCGTACAAGTTACTGAGAGAGATGGTTGAAGAGAAGTGCATAAAACCGAGTCAGGGGGTTTATGAGATGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAGTTGGTGGATAAAATGGTTGACAGGGGATTTGTCTCTCGCTCCATATAG 1581 0.4567 MAFINFRLRFCHSLTRTSKFYSSSSSALVSEATLQQDVDETPQGTSLSPEETLIAEHFHALIKDHYRNNPNPNAAPPTPHFTIPDLSLDFSRITSHQPLSPSVVRRVLEKCGGVRHGIPFLQSLAFFNWATTCEGFPTTPEPYIEMIDLAGKLRHFDLAWHLIDLMKARGVHITVETFSFLVRRYVRAGLAAEAVHTFNRMEDYGCTPDKIAFSIVISILCKKRRASEAQSFFDSLKHRFEPDVIVYTNLVRGWCRAGNISEAERVFAEMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDTITYNFLIETHCKDDNLEEAIKVLNSMVKKGCAPNASTFNLIFRCVAKLHDVNGAHRLYAKMKELKCEPNTLTYNIIMGMFTHARSTDMVLKMKKEMDENEVEPNVNTYRLLITMYCGMGHWNNAYKLLREMVEEKCIKPSQGVYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1482 526 NCBIfam pentatricopeptide repeat 177 209 IPR002885 -
Alju08g1482 526 NCBIfam pentatricopeptide repeat 245 279 IPR002885 -
Alju08g1482 526 NCBIfam pentatricopeptide repeat 315 349 IPR002885 -
Alju08g1482 526 NCBIfam pentatricopeptide repeat 421 454 IPR002885 -
Alju08g1482 526 NCBIfam pentatricopeptide repeat 386 419 IPR002885 -
Alju08g1482 526 NCBIfam pentatricopeptide repeat 280 313 IPR002885 -
Alju08g1482 526 NCBIfam pentatricopeptide repeat 456 486 IPR002885 -
Alju08g1482 526 NCBIfam pentatricopeptide repeat 350 384 IPR002885 -
Alju08g1482 526 Gene3D Tetratricopeptide repeat domain 316 398 IPR011990 GO:0005515
Alju08g1482 526 Gene3D Tetratricopeptide repeat domain 94 229 IPR011990 GO:0005515
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Alju08g1482 526 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 143 395 - -
Alju08g1482 526 Gene3D Tetratricopeptide repeat domain 235 308 IPR011990 GO:0005515
Alju08g1482 526 Gene3D Tetratricopeptide repeat domain 399 525 IPR011990 GO:0005515
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Alju08g1482 526 Pfam PPR repeat 315 345 IPR002885 -
Alju08g1482 526 SUPERFAMILY TPR-like 209 422 IPR011990 GO:0005515
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Alju08g1482 526 Pfam Pentatricopeptide repeat domain 162 220 IPR002885 -
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Alju08g1482 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Alju08g1482 526 Pfam PPR repeat family 347 396 IPR002885 -
Alju08g1482 526 Pfam PPR repeat family 417 465 IPR002885 -
Alju08g1482 526 Pfam PPR repeat family 242 291 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1482 178 519 Miscellaneous Gene Families AT4G11690 26.494 4.28e-44 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1482 08 11524646 11526226 Alju08g1482 08 11524646 11526226 ECH