Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju08g1213 | ATGTCTGCGGTCGAAGCGGAGAAGAATGTCGACGGAAAGAAGGAGGTGGTGAGAAGGGGAGAGCTCTTGTTTTGCGGTGGTTCGTGTTGGGATATTATTGGTCGTCGTAAAGGTCCAGCTGACGGCAACTTGTTCTCTCCAACTCGGCTTCGCCCTCTTGTTGGGATTGATATTCGGTTCGTTGCATCTGGATGCGCATCTTGTCATTGCGTGGCATTAGATGTTGAGGGCCGCTGCTATACTTGGGGACGCAATGAGAAGGGGCAACTGGGTCATGGAGATACCATTCAGCGTGATAGGCCAACCGTGGTATCTGAACTTTCAAAACATAAAATTGTCAAAGCTGGAGCAGGGAGGAACCACACGGTGGTTGTTACAGAGGATGGCCACTCCCTTGCCTTTGGATGGAATAAGCATGGACAGCTAGGTTCAGGTTCTGTGAAAAATGAAATTGAATCATCTCCTGTTCGCTGTCTTGTGTCAGAAGTCAATTATGCTACTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCTGCTGAAGGAGCTTCTATACTTACAGCAGGGCTACCACAATATGGGCAGCTAGGACATGGAACAGACAATGAGTATAATTCCAAAGACAGTTCTGTGAGGTTGGTTTATGAACCCCAACCACGTCCGCGGGCAATTGCTAAGCTATCTGGTGAAACAATTGTCAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTAGATATGAATGGCTTCGTTTACACGTGGGGTTTTGGTGGTTACGGAAGGCTAGGGCATAGGGAGCAGAAGGATGAGTGGTCCCCACGTCGTGTGGATGCTTTTCGGGACAGAAATGTTCTGCCTCCTGATGCTGTGGTTTCAGCTGGTTCTGTTAACTCTGCATGCACTGCAGGTGGAGGGCAATTGTATATGTGGGGCAAAATAAAGAACACAGGTGATGATTGGATGTATCCTAAGCCTCTACTGGATTTAAGTGGCTGGAACTTACGATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCTTCATGTATAAGTTGGGGCCATGCTCAACATGGAGAACTGGGATATGGACCTAATGCACAGAAGTCTTCAGCAGTACCGAAAAAGGTGGACATTCTTGAGGGCATGCATGTTATGGGTGTTGCTTGTGGTATGGGCCATTCCATGGTCATTGTTGATGGAACAAATGTTGGCGAACGACTTGACCAGCTTGATATATATGATGGGAAAGCTTCTGGTGAAGTAAATGAGGAACCTGTAAAGAAAGCTCCAGCGCCTAAGCAGAGTGCCAAAAAAGGTGCAAAAGGTGGTGACAATTCCAAGAAGAAGAAGAAAAAAGAATCATCTGAATCGGAGGAGGAAGAGGATGATGAAGCAAGTGACGATGAGGAGCGACAAAATGGCGTGGCCAGGGGGAAAAGGAAACGCGGCGGAAATAATTCTGGTAGAGCAAAAGGCAAAGCTAAAGGTGCCGGCGCTGGGAGAAATCGGTCTCCAGTAAAATCGGGCAAGAGAGGAAGACCCCGCAAGTCTTGA | 1560 | 0.4769 | MSAVEAEKNVDGKKEVVRRGELLFCGGSCWDIIGRRKGPADGNLFSPTRLRPLVGIDIRFVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKHKIVKAGAGRNHTVVVTEDGHSLAFGWNKHGQLGSGSVKNEIESSPVRCLVSEVNYATCGGDFTVWLSSAEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRAIAKLSGETIVKVACGTNHTVAVDMNGFVYTWGFGGYGRLGHREQKDEWSPRRVDAFRDRNVLPPDAVVSAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLLDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQHGELGYGPNAQKSSAVPKKVDILEGMHVMGVACGMGHSMVIVDGTNVGERLDQLDIYDGKASGEVNEEPVKKAPAPKQSAKKGAKGGDNSKKKKKKESSESEEEEDDEASDDEERQNGVARGKRKRGGNNSGRAKGKAKGAGAGRNRSPVKSGKRGRPRKS | 519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju08g1213 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 128 | 174 | IPR000408 | - | |
| Alju08g1213 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 353 | 399 | IPR000408 | - | |
| Alju08g1213 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 76 | 125 | IPR000408 | - | |
| Alju08g1213 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 247 | 286 | IPR000408 | - | |
| Alju08g1213 | 519 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 185 | 244 | IPR000408 | - | |
| Alju08g1213 | 519 | SUPERFAMILY | RCC1/BLIP-II | 18 | 402 | IPR009091 | - | |
| Alju08g1213 | 519 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 115 | 125 | IPR000408 | - | |
| Alju08g1213 | 519 | MobiDBLite | consensus disorder prediction | 418 | 433 | - | - | |
| Alju08g1213 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 248 | 303 | IPR000408 | - | |
| Alju08g1213 | 519 | MobiDBLite | consensus disorder prediction | 418 | 519 | - | - | |
| Alju08g1213 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 129 | 179 | IPR000408 | - | |
| Alju08g1213 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 77 | 128 | IPR000408 | - | |
| Alju08g1213 | 519 | PANTHER | PROTEIN RCC2 | 6 | 501 | IPR028641 | - | |
| Alju08g1213 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 402 | IPR000408 | - | |
| Alju08g1213 | 519 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 247 | IPR000408 | - | |
| Alju08g1213 | 519 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 389 | 399 | IPR000408 | - | |
| Alju08g1213 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 250 | 264 | IPR000408 | - | |
| Alju08g1213 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Alju08g1213 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 112 | 125 | IPR000408 | - | |
| Alju08g1213 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 78 | 94 | IPR000408 | - | |
| Alju08g1213 | 519 | PRINTS | Chromosome condensation regulator RCC1 signature | 234 | 250 | IPR000408 | - | |
| Alju08g1213 | 519 | MobiDBLite | consensus disorder prediction | 442 | 458 | - | - | |
| Alju08g1213 | 519 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 234 | 244 | IPR000408 | - | |
| Alju08g1213 | 519 | Gene3D | - | 210 | 407 | IPR009091 | - | |
| Alju08g1213 | 519 | Gene3D | - | 14 | 209 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju08g1213 | Alju-ChrAlju08 | 9144617 | 9151411 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju08g1213 | 08 | 9144617 | 9151411 | Alju08g1213 | 08 | 9144617 | 9151411 | ECH |