Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0917 ATGCGATCTCATCCTTCGACTCCCAGCGCACCAGAGCATCGAGCATCTTGTACTAGTGAGGGAATGGCTGCAGCAAAGCCTTGGCGGACGCCTCCAAACCCCTCCCTTGTAACCTCCATAACTTCGCTCCTTCAAGCCCTAAATCCCCAGAACTCTAACATCAGTTCCCAACCCCTTAATCAATTCGCTTCTCATCTCAATCCAGACTTGGTCATCCGAGTAGTTAAGAACCAGAACAACCCCTTCCACGCTCTCTTCTTCTTCAATTGGGCTTCCAATCCTCAACCTAACCCTAACAACTACTTCCATACTCGCTCATGTTACGTCGCCATCACTGACATTTTACTGTCTCACTCCCTTTTCAGCACGGCCTTCTCCCTCCTTCACCACTCTCACAGAGTCTCTGACTTCATCATCGCCAGATTCATCAAAGCTTTCGGTGATCGGGGCGATATTAGGGGTGCCATTCATTGGTTCCAGTATGTTAAATCGTTTGAAAGAGGCCGTTGTTTGTGCTCCTATAATTCGATTTTAGGTGTGCTGGTAAGAGCAAATCGAGTCGATTTGGCGAGGGCTTTCTACGATCAGCTTGTGCAGGAAGGTGTGGTGGTTCCCGATGTTTATTCTTACACCACGATGATGAGGGGCTTCTGTAAAATGGGTATGGTGGAGAATGCAATGAAGGTGTTCGATGAAATGAAGTGTGACCCGAACTTGGTCACTTACAACACCATGATCAATGCATTTTGTAAGAAAGGTGATATGGAGAGTGCCAAGAAGATTCTTCATCAAATGATTGAAAGTGAGAAATGTGTACCAGATGTGGTAACTTACACGACTTTGATTGATGGTTACTCTAAGAATGGTGAATTGCAAGAGGCCATGAACTGTATGATGGAGATGGCGAAGCATGGTATTGAGCCTAATGTCTTGACCTACAATGCACTTATAGAAGGTCTCTGTTTGAGCGGGAAGGTAGACGAAGGAAAGAGGATGATGACCAGGATGCGGTTAAATGGTTTAAAAGACGATATTGTCACACATACGAGCATAATGAAGGGGTTTTGCATAGCAGGCAAGTCTGATGAAGCAATCAAGCACATGAAGGAAATGGTTAGTCTTGGGATGAATCCAGATGTGAAGTCATACGGCATTGTTATTAACGAGTGTTGCAAAATTAGAAAACCAGCTGAAGCAATTTCACTTCTAAGGGAAATGAGGGCGAGGAGCATCAAACCAAGCGCGTCAAATTTCAATGCAGTGTTTAGAGTTCTTGTGGACATAGGGAAGCTTCAAGAAGCCATTCTTCTTTTAAAGCAGATGCCAGAATTTGGTTGCCTGCCTAATTTCTTATCTTATAGCATAGTGATATATGGCCTTTGTAAAATGAAGGGTAGGATGCAAGAAGTTGAAGAGCTGGTTAGGGACATGCTTCAGAATGGACATGAGCCAGATGCTACCATGTACAACTGCTTGCTTCGAGGGTACTGTGAGGACGGCAATGAGCAAATGGCAATTCAGACCGTTTATGACATGATTGGCAATAACTTTGTGGTTAGTGTAGATAGCTTCTCTAATTTGGTCAAGGTGTTGCGCGGGAAGCAATATAACAAAGAGGTTGAGATGATATATGAAGAGATGCTTAGGAGATGCCCTGTACCTGAACCCGACGCGGATGCATACAAAAGGGTTTTACTTTTAACTGAGCATTCATGCTTAAATTCGGCAGAGTAA 1734 0.4423 MRSHPSTPSAPEHRASCTSEGMAAAKPWRTPPNPSLVTSITSLLQALNPQNSNISSQPLNQFASHLNPDLVIRVVKNQNNPFHALFFFNWASNPQPNPNNYFHTRSCYVAITDILLSHSLFSTAFSLLHHSHRVSDFIIARFIKAFGDRGDIRGAIHWFQYVKSFERGRCLCSYNSILGVLVRANRVDLARAFYDQLVQEGVVVPDVYSYTTMMRGFCKMGMVENAMKVFDEMKCDPNLVTYNTMINAFCKKGDMESAKKILHQMIESEKCVPDVVTYTTLIDGYSKNGELQEAMNCMMEMAKHGIEPNVLTYNALIEGLCLSGKVDEGKRMMTRMRLNGLKDDIVTHTSIMKGFCIAGKSDEAIKHMKEMVSLGMNPDVKSYGIVINECCKIRKPAEAISLLREMRARSIKPSASNFNAVFRVLVDIGKLQEAILLLKQMPEFGCLPNFLSYSIVIYGLCKMKGRMQEVEELVRDMLQNGHEPDATMYNCLLRGYCEDGNEQMAIQTVYDMIGNNFVVSVDSFSNLVKVLRGKQYNKEVEMIYEEMLRRCPVPEPDADAYKRVLLLTEHSCLNSAE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0917 577 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 34 394 - -
Alju08g0917 577 Pfam Pentatricopeptide repeat domain 473 531 IPR002885 -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Alju08g0917 577 Pfam PPR repeat family 273 321 IPR002885 -
Alju08g0917 577 Pfam PPR repeat family 414 462 IPR002885 -
Alju08g0917 577 Pfam PPR repeat family 344 392 IPR002885 -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Alju08g0917 577 Gene3D Tetratricopeptide repeat domain 234 303 IPR011990 GO:0005515
Alju08g0917 577 Gene3D Tetratricopeptide repeat domain 38 233 IPR011990 GO:0005515
Alju08g0917 577 Pfam PPR repeat 173 202 IPR002885 -
Alju08g0917 577 Gene3D Tetratricopeptide repeat domain 304 394 IPR011990 GO:0005515
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 273 IPR002885 -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 240 275 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 312 341 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 418 449 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 488 520 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 208 235 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 346 380 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 452 486 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 173 206 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 276 310 IPR002885 -
Alju08g0917 577 NCBIfam pentatricopeptide repeat 382 414 IPR002885 -
Alju08g0917 577 MobiDBLite consensus disorder prediction 1 31 - -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Alju08g0917 577 SUPERFAMILY HCP-like 148 377 - -
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 236 IPR002885 -
Alju08g0917 577 Gene3D Tetratricopeptide repeat domain 395 573 IPR011990 GO:0005515
Alju08g0917 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 484 IPR002885 -
Alju08g0917 577 Pfam PPR repeat 203 234 IPR002885 -
Alju08g0917 577 Pfam PPR repeat 235 265 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0917 166 565 Glycosyltransferase AT1G05670 28.889 3.41e-53 191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0917 08 6976647 6978554 Alju08g0917 08 6976647 6978554 ECH