Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0780 ATGGCTTCCCTTATCTTTCTGTCTCTTCTTTTGTTCTCCTCCTCCTCCTTCCATGTCTCCTCCGCCTTTTCTGACGGCTTAGTGGCAAATGGAAACTTTGAGCTGGGCCCAAAGCCGTCGGACATGAACGGCACGGTGGTGATCGGCGGAAGCCGGGCCATACCGGAGTGGGAGATATCAGGTTTTGTGGAGTACATTAAATCAGGACAAAAACAGGGTGATATGTTGCTGGTGGTCCCAGAGGGAGGATTCGCAGTGAGGCTAGGCAATGAGGCGTCCATTAAGCAGAAGTTAAGAGTCGTTAAAGGAATGTACTATTCCATTTCCTTTGTAGCTGCGCGTACTTGTGCTCAAGAGGAGCAATTAAACGTCTCTGTTTCTCCTCACTCCGGTGTGCTTCCAATGCAAACTCTGTACAGTAGTAATGGTTGGGACGCTTATGCTTGGGCCTTCAAGGCCCAATACCCAGTGGTTGAAATGCTCATTCACAACCCTGGTGTTGAGGAGGACCCAGCTTGTGGCCCACTTATTGATTCAGTTGCTGTCAAAGCCTTGTACCCTCCAAGACCTACTAACAAGAACATACTGAAGAATGGTGGGTTTGAAGAAGGACCTTATGTGTTTCCCAACACATCTTGGGGTGTGCTTATACCACCAAACATTGAAGACGACCATTCGCCGTTGCCTGGGTGGATGGTGGAGTCTCTGAAGGCCGTGAAATACATAGACTCCGATCACTTCTCGGTGCCTCAGGGGAGAAGAGCGGTGGAGCTGCTTTCCGGAAAAGAAAGCGCGATAGCCCAAGTGGTCAGAACCGTGCCAGGCACAAGCTACGTGCTTTCATTTGCAGTGGGAGACGCTAAGAATTCATGTGAAGGGTCTCTGATAGTAGAAGCATTTGCAGGGAAAGACACCATAAAAGTGCCGTATGAATCCAAAGGAAAGGGAGGGTTTAAGAGAGCAGCCCTTAGGTTTGTGGCAGTGGGCCCCAGAACGCGCATAATGTTCCTCAGCACATTCTACACAATGAGAAGCGATGACTGCTCATCCTTGTGTGGGCCTGTGATTGATGATGTTAAGCTGTTGAGTGTACGTAAACCAGGAGTACAGTACCTGAGTGCAGAAGAGGAGGAGCTTAGAAGGAGAAGGGTAGCTATGGAAAATCTTGGAAGCTTTGTTGAAGATGGAACCTATCGTCATTTGAAACCAGAGGAAAAGCTCTGCTCTCCTTTTTGCAATTTCTCTCCCATGGCTTTGCCGAATCAGCAAACCGTTGAATATCCCAGCTTCAAGCTCGTAATCGTTGGTGATGGTGGAACTGGCAAGACGACATTCGTGAAGAGGCATCTAACTGGAGAATTTGAGAAGAAATATGAACCCACCATTGGGGTTGAAGTCCATCCCTTGGATTTTTTCACAAACTGTGGGAAACTTCGATTCTACTGCTGGGATACAGCTGGACAAGAAAAATTCGGTGGCCTTAGAGATGGATATTATATCCATGGACAATGTGCAATTATTATGTTTGATGTTACTGCACGGCTGACGTACAAAAATGTTCCAACTTGGCATCGTGATCTTTGCCGGGTCTGCGAAAACATCCCAATTGTTCTTTGTGGTAACAAGGTTGATGTCAAGAACAGACAGGTGAAGGCAAAGCAAGTTACTTTCCACCGGAAGAAGAATTTGCAGTACTACGAGATTTCAGCAAAGAGTAACTACAATTTTGAGAAGCCTTTCCTGTACCTAGCCAGGAAACTTGCTGGTGACCCTAACTTGCACTTTGTAGAATCTCCTGCCTTGGCTCCACCCGAAGTTCAGATTGATTTAGCTGCACAACAACAGCACGAGGCTGAGCTTGCTCAAGCTGCTATTCAACCCCTTCCTGACGACGATGACGACGCGTTTGAGTAA 1914 0.4744 MASLIFLSLLLFSSSSFHVSSAFSDGLVANGNFELGPKPSDMNGTVVIGGSRAIPEWEISGFVEYIKSGQKQGDMLLVVPEGGFAVRLGNEASIKQKLRVVKGMYYSISFVAARTCAQEEQLNVSVSPHSGVLPMQTLYSSNGWDAYAWAFKAQYPVVEMLIHNPGVEEDPACGPLIDSVAVKALYPPRPTNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMVESLKAVKYIDSDHFSVPQGRRAVELLSGKESAIAQVVRTVPGTSYVLSFAVGDAKNSCEGSLIVEAFAGKDTIKVPYESKGKGGFKRAALRFVAVGPRTRIMFLSTFYTMRSDDCSSLCGPVIDDVKLLSVRKPGVQYLSAEEEELRRRRVAMENLGSFVEDGTYRHLKPEEKLCSPFCNFSPMALPNQQTVEYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKLRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAAIQPLPDDDDDAFE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0780 637 FunFam DUF642 family protein 190 361 - -
Alju08g0780 637 SMART ran_sub_2 435 636 - -
Alju08g0780 637 SMART ras_sub_4 427 590 - -
Alju08g0780 637 ProSiteProfiles small GTPase Ran family profile. 423 587 IPR002041 GO:0003924|GO:0005525|GO:0006913
Alju08g0780 637 Pfam Ras family 431 587 IPR001806 GO:0003924|GO:0005525
Alju08g0780 637 SUPERFAMILY Galactose-binding domain-like 24 183 IPR008979 -
Alju08g0780 637 SMART rab_sub_5 430 590 - -
Alju08g0780 637 ProSiteProfiles small GTPase Ras family profile. 421 626 IPR001806 GO:0003924|GO:0005525
Alju08g0780 637 NCBIfam small GTP-binding protein domain 430 580 IPR005225 GO:0005525
Alju08g0780 637 ProSiteProfiles small GTPase Rab1 family profile. 424 626 - -
Alju08g0780 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 610 IPR027417 -
Alju08g0780 637 FunFam GTP-binding nuclear protein 421 635 - -
Alju08g0780 637 Pfam Protein of unknown function (DUF642) 195 361 IPR006946 -
Alju08g0780 637 Pfam Protein of unknown function (DUF642) 26 183 IPR006946 -
Alju08g0780 637 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 443 457 IPR002041 GO:0003924|GO:0005525|GO:0006913
Alju08g0780 637 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 510 531 IPR002041 GO:0003924|GO:0005525|GO:0006913
Alju08g0780 637 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 584 606 IPR002041 GO:0003924|GO:0005525|GO:0006913
Alju08g0780 637 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 490 508 IPR002041 GO:0003924|GO:0005525|GO:0006913
Alju08g0780 637 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 546 564 IPR002041 GO:0003924|GO:0005525|GO:0006913
Alju08g0780 637 Gene3D - 190 362 - -
Alju08g0780 637 SMART rho_sub_3 432 586 IPR001806 GO:0003924|GO:0005525
Alju08g0780 637 PANTHER OS02G0527500 PROTEIN-RELATED 7 364 - -
Alju08g0780 637 CDD Ran 430 595 IPR002041 GO:0003924|GO:0005525|GO:0006913
Alju08g0780 637 Gene3D - 419 635 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0780 Alju-ChrAlju08 5874635 5881561 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0780 08 5874635 5881561 Alju08g0780 08 5874635 5881561 ECH