Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0777 ATGGCTGTCGTATCTGCTAGATTCCCGTTTGGATTTTCTGTTCACTCCAACCGGAAAGTGGACATTTCAAGTTCCGAGTTTCCTCTGAATGTGGAAGTTTCAAGAATTAGTTTGTACCCAAGCTCTCTGTCCTCCACAGCTTCAAAGGGTTCTGTTGGCCGCATATGTGCACGTCCTAATATCGATGATTTCAGCTGGGAGAAATTGCCAACGCCCATGCTTGATGCAATTGATAATCCTCTTTGTTTGAAGAACTTATCTCTTAAGGAACTCAAGCAGCTGGCCAGTGAAATTCGATTGCAATTGTCTTTGATGACGTTGGATGAACGCATTTCATTTGAGGCAAGTTTGGCAGTGGTGGAACTGACAATTGCAATACACCATGTTTTTCATGCTCCAGTGGACAAGATCTTGTGGGATGTTGGCGACCAAACATACGCACATAAGATTCTTACTGGAAGGAGACCCCTCATGAAAACAGTGAGGCAAAAGAATGGCCTTTCAGGATTTACATCCCGGTCTGAGAGTGAATATGATGCATTCGGTGCAGGTCATGGATGCAACAGCATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATCTGAAGGGGAGGCGAGAACGTGTAGTTGCTGTTATCAGCAATTGGACAACTATGGCTGGTCAGGTTTATGAAGCAATGAGCAATGCAGGGTATTTAGACTCAGATATGGTTGTGATTCTGAATGACTGCCGTCACTCTTTACATCCAAAAGTCGAAGAGGGCCCAAGGGCATCAATCAATGCATTATCCGGTACCCTAAGCAGGATCCAGTCCAGTAAATCCTTCCGAAGGTTTAGAGAAGTTGCTAAAGGTGTTACAAAGCGAATTGGGGGAGGTATGCATGAACTGGCAGCTAAAGTTGATGAATATGCACGTGGTATGATGGGTCCTCTGGGGTCCACTCTTTTTGAAGAGCTTGGGTTGTACTACATTGGCCCTGTGGATGGACACAACATTGAGGAGCTAATTTGTGTTCTAAAACAAGTAGCATCTCTTGATTCAATGGGCCCTGTCCTGATTCATGTAGTAACTGGTGAAAACCATGTAGTGGAATATAATCAGAGTAATATAGCAGATGGGCCGCAGGATGGCTCTAGCAACTTTGATTCATTTCATCAAGCTAGTCAACGTCGAACATATAGTGATTGCTTGGCGGAAACTTTGATCATGGAAGCAGAGAAAGATAAAGATATTGTGCTAGTTCATGCAGGAATTACAACGGAACCATCACTTCAACTGTTTCGACAAAAAATGCCAGAAAAGTATTTTGATGTGGGTATGGCTGAGCAGCATGCAGTTACATTTGCATCTGGTTTGGCATGTGGGGGATTGAAGCCGTTTTGCATAATACCTTCCTCCTTCCTTCAGAGAGCTTATGACCAGGTGATCCATGACGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATCACAAGTGCAGGTTTGGTAGGTTCTGATGGTCCCCTCCATTGTGGCGCATTCGATATAACGTTCATGTCATGCTTGCCAAATATGATAGTCATGGCACCATCTGATGAGGTTGAGCTTGCGAACATGGTGGCTACTGCTAGTCATGTCAATGACCGGCCAATTTGCTTCCGGTATCCAAGAGGTGCTTTAGTTAGCAGCAACTACACTGCATGCAACGGAGTACCCCTTGAGATTGGAAAAGGGAGAGTTATTGTTGGTGGAAAAGATGTTGCTCTACTGGGATATGGATCAATGGTTCAGAACTGCCTAAACGCTTACGTACTTCTTTCAAAGCTAGGGATTGAGGTCACAGTTGCTGATGCCAGGTTCTGCAAGCCCCTGGACATCAATCTTCTCAGGCAGCTTTGTGAAAACCATTCCTTCCTGATTACCGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTGGCCCAGTTTTTTGCTCTTGACGGACAGCTTGATGGAAAAATTAAGTGGCGACCTATTGTCTTACCGGACTGTTACATAGAGCATGCCTCGCCAAGTGAGCAGCTTGATCAGGCAGGACTGACCGGACATCACATTGCCGCCACGGCTTTGAGCTTACTCGGCCGTCCCCGCGAAGCCCTTCATTTTATAATCCCGTGA 2142 0.4547 MAVVSARFPFGFSVHSNRKVDISSSEFPLNVEVSRISLYPSSLSSTASKGSVGRICARPNIDDFSWEKLPTPMLDAIDNPLCLKNLSLKELKQLASEIRLQLSLMTLDERISFEASLAVVELTIAIHHVFHAPVDKILWDVGDQTYAHKILTGRRPLMKTVRQKNGLSGFTSRSESEYDAFGAGHGCNSISAGLGMAVARDLKGRRERVVAVISNWTTMAGQVYEAMSNAGYLDSDMVVILNDCRHSLHPKVEEGPRASINALSGTLSRIQSSKSFRRFREVAKGVTKRIGGGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEELICVLKQVASLDSMGPVLIHVVTGENHVVEYNQSNIADGPQDGSSNFDSFHQASQRRTYSDCLAETLIMEAEKDKDIVLVHAGITTEPSLQLFRQKMPEKYFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVIHDVDQQKIPVRFVITSAGLVGSDGPLHCGAFDITFMSCLPNMIVMAPSDEVELANMVATASHVNDRPICFRYPRGALVSSNYTACNGVPLEIGKGRVIVGGKDVALLGYGSMVQNCLNAYVLLSKLGIEVTVADARFCKPLDINLLRQLCENHSFLITVEEGSIGGFGSHVAQFFALDGQLDGKIKWRPIVLPDCYIEHASPSEQLDQAGLTGHHIAATALSLLGRPREALHFIIP 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0777 713 Gene3D - 570 701 IPR009014 GO:0003824
Alju08g0777 713 Gene3D - 392 564 - -
Alju08g0777 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 570 702 - -
Alju08g0777 713 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Alju08g0777 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 554 IPR029061 -
Alju08g0777 713 CDD TPP_PYR_DXS_TK_like 399 551 - -
Alju08g0777 713 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 76 699 IPR005477 GO:0008661|GO:0016114
Alju08g0777 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Alju08g0777 713 SMART Transket_pyr_3 392 557 IPR005475 -
Alju08g0777 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 358 IPR005477 GO:0008661|GO:0016114
Alju08g0777 713 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Alju08g0777 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Alju08g0777 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 42 708 IPR005477 GO:0008661|GO:0016114
Alju08g0777 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 454 IPR029061 -
Alju08g0777 713 CDD TPP_DXS 113 358 IPR005477 GO:0008661|GO:0016114
Alju08g0777 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 702 IPR005477 GO:0008661|GO:0016114
Alju08g0777 713 Gene3D - 66 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0777 Alju-ChrAlju08 5851780 5857180 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0777 08 5851780 5857180 Alju08g0777 08 5851780 5857180 ECH