Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0476 ATGGCAGGAAAGGCCAAGAACAAGACGGATAATGAAGTGGGTTGTGGTTTCGTGGGGAGGATTTTCCATCTCACAAGCTACATGCTCAGGAAATCATCTGTTCATTCACTACCCACGAAGGTGAACGATCAGAGCAAAACTGAATCCAAGAAGCTGCCAAATCTTGAATCCATGGCTACTTCAACTCAGTCGCACAAACCGCCCAGAAAGAGCCCTTCCGATCATCGAACACCTTCTGCCTTCAAGAATAAAAATCCGAAACCTTCGGACGCTGCAAGAAGCTCAACATCATCCTGTGCTAATTCATTACAAACTAAGATTCAACAAAACCACAAGTTGAATAATAATAGCAGAACACAGAGGCAGCCTACTGAAAACTCGTTGGAGCTTGCTAGGGTAAGCACTCATTACCAGCGAGAAAACGAGAATAAATCCCCCCTCAAACTTACTGGTAATTTGGTTGTAAATACCATCCCAAGAACTAGAACTAGGACTCGTGTTCCCAAGAGTAAAGATTTGATGAACTCATCACTCAAGTATCACACTAACAAAAGTGTAACGGGGAATATTATGAAGAAGAGCACTGATGAGATTCCCAAGAACAGGGTAGACCCTGAAGGGTTGAAGACAATGGGAAATGAAGCATATAAGCAAGGAAGATTTGAAGAGGCTTTGTCTTTATATGAGCGAGCGATTGCTATTGATTCAAATAAGGCAACTTTTCATTGCAATAAGAGTGCGGCTTTGATAGGATTAGGCCGTCTTCTGGAAGCAATTGTTGAGTGCCAGGAAGCTATCCGGCTGGAACCTTCTTATAACAGACCCCATCACCGTTTGGCAACCATATATCTCAGATTGGGAGAAGCAGAGAAGGCACTAAGTTACAATGTCGCAACCCCATATTCTGATTCTGCACTCGCCTTCCAAGCTCAGTCTCTTCGCAACCACCTTCAAAAATGCATTGAAGCAAGGAAAATCAATGATTGGGATGCTATACTGAAGGAAACGCAATCTGCCATATCATTAGGTGCTGATTCAAGTCCTCAGGTTTATGCGTTGCAAACAGAAGCCTTACTTAAGCTCTTCAGACATCAGGAGGCATATGCTACCTATGAGAAAATGCCCAAATTTGCTATTAATTGGTGCACCAAGTTGTTTGGTCTGGCTCGTAGTGCTTATCTGTTTATGATAGGCGCGCAGGCTTACTTGGCTGTTGGCAGGTTCGAGGATGCAGTGACGGCAGCTGAGCAAGCAGCTAAACTTGATCCAAGTGACAAAGAGGTGAGTACAGTGGTAAAGAGGGCCAGAGCAATATCATCAGCCAGAATGAGTGGAAACTTACTGTTCAAGGCAACCAAATACACGGAAGCATGTGCTGTATACAACGAAGGACTAGAGCACGATCCATACAACTCAGTCCTGCTATGCAACAGAGCAGCATGTCGTTCTAAGCTCGGCCACTTTGAGAAAGCCATTGAAGATTGTAATGCAGCCCTTGCAGTTCAGCCTAGTTATAGCAAGGCACGGTTAAGGAGGGCATATTGCAATGCCAAGCTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGCTATTGAGAGAGAAACCAGGGGATGAGGAGGTGGGTAGGGCTCTGTTTGAGGCTCAGCTTCAGCTCAAGATGCTGCGTGGGGAAGATGTTAAGGACTTCAAATTTGGGTGTAATTTGGTTTTTGTATCGAGCAATGATCGGTTTCGACATTATGTAACCTCACCTGGTATGTCTGTGGTGCTATTTTGCAACAAGGCAACCCACAAGCAAGTATTGCTAGTGTTGGAGCAAACCTGCAAGAGATTTCCATCTGTTAATTTCCTCAAGGTAGAAATTGAAGACCACCCCTACTTAGCAAAATCAGAAGGCGTGAGTTCTGTGCCGGCATTCAAAATATACAAGAATGGATCAAAGGTTAAGGAAATTCCAGGCAACAATCGTGAGTTGTTAGAAAGATCGGTTAAATTGTACAGCAGCTAA 2013 0.4401 MAGKAKNKTDNEVGCGFVGRIFHLTSYMLRKSSVHSLPTKVNDQSKTESKKLPNLESMATSTQSHKPPRKSPSDHRTPSAFKNKNPKPSDAARSSTSSCANSLQTKIQQNHKLNNNSRTQRQPTENSLELARVSTHYQRENENKSPLKLTGNLVVNTIPRTRTRTRVPKSKDLMNSSLKYHTNKSVTGNIMKKSTDEIPKNRVDPEGLKTMGNEAYKQGRFEEALSLYERAIAIDSNKATFHCNKSAALIGLGRLLEAIVECQEAIRLEPSYNRPHHRLATIYLRLGEAEKALSYNVATPYSDSALAFQAQSLRNHLQKCIEARKINDWDAILKETQSAISLGADSSPQVYALQTEALLKLFRHQEAYATYEKMPKFAINWCTKLFGLARSAYLFMIGAQAYLAVGRFEDAVTAAEQAAKLDPSDKEVSTVVKRARAISSARMSGNLLFKATKYTEACAVYNEGLEHDPYNSVLLCNRAACRSKLGHFEKAIEDCNAALAVQPSYSKARLRRAYCNAKLERWEAAIQDYEMLLREKPGDEEVGRALFEAQLQLKMLRGEDVKDFKFGCNLVFVSSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVSSVPAFKIYKNGSKVKEIPGNNRELLERSVKLYSS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0476 670 SMART tpr_5 438 471 IPR019734 GO:0005515
Alju08g0476 670 SMART tpr_5 472 505 IPR019734 GO:0005515
Alju08g0476 670 SMART tpr_5 205 238 IPR019734 GO:0005515
Alju08g0476 670 SMART tpr_5 239 272 IPR019734 GO:0005515
Alju08g0476 670 SMART tpr_5 506 539 IPR019734 GO:0005515
Alju08g0476 670 SMART tpr_5 392 425 IPR019734 GO:0005515
Alju08g0476 670 Pfam TPR repeat 212 247 - -
Alju08g0476 670 ProSiteProfiles TPR repeat profile. 392 425 IPR019734 GO:0005515
Alju08g0476 670 SUPERFAMILY TPR-like 205 427 IPR011990 GO:0005515
Alju08g0476 670 ProSiteProfiles TPR repeat profile. 205 238 IPR019734 GO:0005515
Alju08g0476 670 MobiDBLite consensus disorder prediction 82 127 - -
Alju08g0476 670 Pfam Tetratricopeptide repeat 399 472 - -
Alju08g0476 670 MobiDBLite consensus disorder prediction 51 67 - -
Alju08g0476 670 CDD TRX_family 579 666 - -
Alju08g0476 670 Gene3D Glutaredoxin 568 669 - -
Alju08g0476 670 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 666 IPR044534 -
Alju08g0476 670 Pfam Tetratricopeptide repeat 474 505 IPR001440 GO:0005515
Alju08g0476 670 SUPERFAMILY Thioredoxin-like 568 663 IPR036249 -
Alju08g0476 670 Pfam Thioredoxin 600 660 IPR013766 -
Alju08g0476 670 Gene3D Tetratricopeptide repeat domain 204 557 IPR011990 GO:0005515
Alju08g0476 670 MobiDBLite consensus disorder prediction 35 127 - -
Alju08g0476 670 SUPERFAMILY TPR-like 443 554 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0476 Alju-ChrAlju08 3433941 3436725 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2591 07 51500138 51502710 Alju08g0476 08 3433941 3436725 CCT
Alju08g0476 08 3433941 3436725 Alju08g0476 08 3433941 3436725 ECH