Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0471 ATGCTGAGGAATTTGTTATGGGCAACATCGAAGCATGATGTATACCTTATGCAAAATTACTCTGTGATGCATTGGTCGTCTTTGCTTCAGAAGAGTAAAGAAGTACTTAATGTGGTTAAACCGATTGTTCCAACTGTTAAGCACCCTGGATTTTTGGCTCAACCTATCTCCAGAGTACAAATAAGCACCATGGCTGTTAAGGAAAATTTAATGGTAGCGGGTGGTTTCCAGGGTGAGCTTATTTGCAAGAATCTGAATCAACCTGGAGTTACTTTCTGTAGCAAAATAACTACCGATGATAATAGTATAACCAATGCTGTGGATGTTTACCGTAATCCCAGTGGTTCTTTGAGGGTCATGACAGCAAATAATGACGCCCAGGTTCGGGTTTTCGATGCTGATAATTTTGCTTCTCTTGGTTGCTTCAAATATGACTGGTCTGTTAACAATATTTCCGTTAGTCCCGATGGGAAGTTGTTAGCTGTTCTTGGGGATAGTACCGAGGGTTTGATAACTGATGCTAACACTGGAAAGGTTACTGGGAGCCTGAAAGGACACTTGGACTATTGTTTTGCCTCAGCATGGCACCCAGATGGGCGAATATTGGCTACTGGGAATCAGGACACAACATGTAGGTTGTGGGACATTAGAAATCTTTCACGCTCCCTTGCTGTACTCAAGGGAAGAATGGGAGCAGTAAGAGCCCTAAGGTTCACTTCAGATGGACGGTTTCTGGCTATGGCTGAGCCTGCAGATTTCGTCCATATTTTTGACTCTCACAGTGTCTATGAACAAGGACAAGAAATTGATTTATTTGGTGAGATCGCTGGTATTTCCTTCAGCCCGGACACGGAGGCTCTGTTTGTTGGGATAGCTGATCGTACTTATGGAAGCTTGTTAGAGTTCAACAGGAAACGTTGTAATCAATATCTAGACTCCATGTTTTAG 948 0.4283 MLRNLLWATSKHDVYLMQNYSVMHWSSLLQKSKEVLNVVKPIVPTVKHPGFLAQPISRVQISTMAVKENLMVAGGFQGELICKNLNQPGVTFCSKITTDDNSITNAVDVYRNPSGSLRVMTANNDAQVRVFDADNFASLGCFKYDWSVNNISVSPDGKLLAVLGDSTEGLITDANTGKVTGSLKGHLDYCFASAWHPDGRILATGNQDTTCRLWDIRNLSRSLAVLKGRMGAVRALRFTSDGRFLAMAEPADFVHIFDSHSVYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRCNQYLDSMF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0471 315 SMART WD40_4 135 173 IPR001680 GO:0005515
Alju08g0471 315 SMART WD40_4 176 215 IPR001680 GO:0005515
Alju08g0471 315 SMART WD40_4 219 258 IPR001680 GO:0005515
Alju08g0471 315 Pfam WD domain, G-beta repeat 178 215 IPR001680 GO:0005515
Alju08g0471 315 SUPERFAMILY WD40 repeat-like 54 302 IPR036322 GO:0005515
Alju08g0471 315 ProSitePatterns Trp-Asp (WD) repeats signature. 202 216 IPR019775 -
Alju08g0471 315 FunFam WD-40 repeat family protein 96 312 - -
Alju08g0471 315 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 312 - -
Alju08g0471 315 Gene3D - 66 311 IPR015943 GO:0005515
Alju08g0471 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Alju08g0471 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0471 Alju-ChrAlju08 3381148 3383539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0471 161 295 Miscellaneous Gene Families AT5G08390 30.667 7.23e-13 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0471 08 3381148 3383539 Alju08g0471 08 3381148 3383539 ECH