Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0358 ATGGCCACTGTGCCTGCGCTCTCAAATTCGTACTTCTTTGCTATAAAACCTCTTCCGAAAGCAACTCCATTGAATGCCAATATCACCTTTGTTATACCATCTTCTGTTTCCTCCTGGTGTCATCTGCCTCTATGTTGTGGCAGGCGCACACCCGTTGCTGTGTCTGTGAAGGAGAATATGGGCCGCATTCAAAAAACAATCAACGATTTCGCGAGCTTGAACTACTGGGTTGTTAGCGATTACTATCGTCTGGTGGACTCCGTCAATGCCTTTGAACCGCAGATACAGAGGCTCGCCGATGAGCAGTTGACTGCGAAAACTCGGGAGTTTCGGCTTCGGCTTAAGCGAGGGGATTCGCTTGCTGATATTCAAGCTGAGGCATTTGCTGTTGTTCGCGAAGCTGCAAGAAGAAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGTGGAGCGGTGCTTCATGATGGGTCCATTGCAGAGATGAAAACGGGGGAGGGAAAAACATTAGTTTCCACCTTAGCGGCTTATCTTAATGCCTTGACTGGTGAGGGTGTCCATGTGGTGACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGTCGAATTCATCGATTCTTGGGTCTTTCCGTGGGCCTTATTCAGAGGGGGATGACTGCTGAAGGGCGGAGATCCAATTATAGATGTGATATAACATATACCAACAACTCGGAACTTGGCTTTGACTACCTACGAGATAATCTTGCTGGAAGTAGTGGAGAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTCGATGAAGTGGACTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATTAGTGGTGAGGCCAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTGGCTGAATTGCTTATACGGGGAATTCATTATAATGTGGAGCTTAAAGATAATTCTGTTGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACAAATGACCTTTGGGATGAAAATGACCCCTGGGCTAGATTTGTGATGAATGCTGTGAAAGCTAAAGAATTCTACCGCCGAGATGTGCAATACATAGTCAGGGATGGGAAGGCCTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTAGAGGCAAAGGAAGGTCTAAAGATTCAGGCAGATTCAGTTGTTGTAGCACAGATCACATACCAATCATTATTTAAACTCTATCCAAAGTTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCAGTCATCGAAGTGCCCACCAATCTCCCCAACATTCGGAAAGATTTGCCCATCCAAGCTTTTGCTACTGCTCGTGGCAAATGGGAGCAGGTTCGCCGTGAAGTTGATTATATGTTTAGACAATGTCGTCCAGTCTTAGTTGGGACAACCAGCGTAGAAAATTCTGAACTTTTGTCTGGTCTGCTTAAGGAATGGAATATTCCCCATAATGTCTTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAGGTTGTTGCACAGGCAGGGCGTAAAAATGCCATTACAATCTCTACAAATATGGCAGGCAGGGGCACGGATATAATCCTTGGTGGAAATCCAAAAATGCTAGCCAGGGAAATTATAGAGGACAGCTTACTTTCATTTTTGTCTCCAGAGGCTTCTAATATTGAACTTGTTGGGGAGGCAATTTCACAGAAGGTGCTTCCAAAGATAAAGGTTGGATCATCGTCACTGGCTTTATTGGCTAAGACAGTCTTAATGGCTAAATATGTATCCAAAAGCGAAGGTAAAAGCTGGACATATCAGAAGGCTAAATCTTTCATCTCAGAGGCTATTGAAATGAGTCAGTCATATAATTTGAATGAGTTGGAAAAGCTTGCAAATGAAGAATCTGAGATGTACCCTCTTGGTCCAACAGTAGCACTTGCCTATTTGTCAGTTTTGGAGGATTGTGAAAAGCACTGTTTGAATGAAGGGTCTGAGGTGAAAAGACTAGGGGGCCTTCATGTAATTGGTACATCTTTGCACGAGTCCCGACGAATCGACAACCAGCTCCGTGGCAGAGCCGGAAGGCAGGGGGATCCTGGATCAACGCGATTTATGGTCAGCTTGCAGGATGAAATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCAGTGAGACTTATATCAAAGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTCAAGCAGCTGTTAGCACTGCAAATTAACGCGGAGAAGTACTTCTTTGGTGTGAGAAAGAGCCTAGTCGAGTTTGATGAAGTGTTAGAGGTTCAACGAAAGCATGTTTATGACCTTAGACAGTTAATTTTAACAGGAGATGATGAAAGTTGTTCCCAACACATATACCGGTACATGCAAGCTGTGGTGGATGAGATTGTCTTCAGTAACGTTGATCTGCAAAAGCATCCAGGTAGTTGGAACTTGAGTAAACTTGTTAAGGAGTTAATGGCAATTGGTGGAAAGCTGTTGCATGAATCTTTTGCAGGGATTACCAGAGACTCTTTGCTGAAGTCACTTGAGCAATTGCATGATGTGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATTTGCCAGCACCTCCAAATGCCTTCCGGGGAATTCGCCGGAAGGGCTCTTCATTAAGGCGTTGGCTTACTATATGCTCTGATGATTCAATCAAGGATGGAAATTTTCGGACAGTCACTAATCTTCTTCGCAAGTACCTTGGAGATTTTTTAATTGCTTCATACCTAAATGTTGTTGAAGAGTCTGGTTATGACGAGAGACATGTAAAGGAAATTGAGAGAGCAGTTCTTTTGAAAACGCTGGATAGTTTCTGGAGAGATCATCTTGTAAACATGAATAGACTCAGTTCGGCGGTAAACGTAAGGAGTTTTGGACATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTTAGTGCAACTCGAAGGTTAACTGTGGAGTCACTGCTGCAATATTGGGCATCTCCTATGGAAACCGAAGAACTATTTGATTTCTAG 3162 0.4326 MATVPALSNSYFFAIKPLPKATPLNANITFVIPSSVSSWCHLPLCCGRRTPVAVSVKENMGRIQKTINDFASLNYWVVSDYYRLVDSVNAFEPQIQRLADEQLTAKTREFRLRLKRGDSLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRIHRFLGLSVGLIQRGMTAEGRRSNYRCDITYTNNSELGFDYLRDNLAGSSGELVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGIHYNVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNAVKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVDYMFRQCRPVLVGTTSVENSELLSGLLKEWNIPHNVLNARPKYAAREAEVVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLSPEASNIELVGEAISQKVLPKIKVGSSSLALLAKTVLMAKYVSKSEGKSWTYQKAKSFISEAIEMSQSYNLNELEKLANEESEMYPLGPTVALAYLSVLEDCEKHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLALQINAEKYFFGVRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIYRYMQAVVDEIVFSNVDLQKHPGSWNLSKLVKELMAIGGKLLHESFAGITRDSLLKSLEQLHDVGSIDIVNFSLPNLPAPPNAFRGIRRKGSSLRRWLTICSDDSIKDGNFRTVTNLLRKYLGDFLIASYLNVVEESGYDERHVKEIERAVLLKTLDSFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMETEELFDF 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0358 1053 Pfam SecA preprotein cross-linking domain 298 402 IPR011130 GO:0016020|GO:0017038
Alju08g0358 1053 CDD SF2_C_secA 464 735 IPR044722 -
Alju08g0358 1053 FunFam Protein translocase subunit SecA 81 302 - -
Alju08g0358 1053 Pfam SecA Wing and Scaffold domain 765 1040 IPR011116 GO:0016020|GO:0017038
Alju08g0358 1053 Pfam SecA DEAD-like domain 78 445 IPR011115 GO:0005524|GO:0016020|GO:0017038
Alju08g0358 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 748 IPR027417 -
Alju08g0358 1053 SMART SecA_DEAD_2 67 446 IPR011115 GO:0005524|GO:0016020|GO:0017038
Alju08g0358 1053 ProSitePatterns SecA family signature. 546 561 IPR020937 GO:0006605|GO:0006886|GO:0016020
Alju08g0358 1053 Gene3D Helical scaffold and wing domains of SecA 770 886 - -
Alju08g0358 1053 Gene3D Helical scaffold and wing domains of SecA 916 1040 - -
Alju08g0358 1053 Gene3D - 292 412 - -
Alju08g0358 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 459 IPR027417 -
Alju08g0358 1053 Hamap Protein translocase subunit SecA [secA]. 62 1043 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 FunFam Protein translocase subunit SecA 770 889 - -
Alju08g0358 1053 SUPERFAMILY Pre-protein crosslinking domain of SecA 290 411 IPR036670 GO:0016020|GO:0017038
Alju08g0358 1053 PRINTS SecA protein signature 230 250 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 PRINTS SecA protein signature 383 405 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 PRINTS SecA protein signature 161 175 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 PRINTS SecA protein signature 177 187 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 PRINTS SecA protein signature 457 470 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 PRINTS SecA protein signature 420 437 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 PRINTS SecA protein signature 123 147 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 ProSiteProfiles SecA family profile. 63 767 IPR014018 -
Alju08g0358 1053 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 55 1050 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 CDD DEXDc_SecA 102 458 - -
Alju08g0358 1053 FunFam Protein translocase subunit SecA 911 1040 - -
Alju08g0358 1053 Gene3D - 461 767 IPR027417 -
Alju08g0358 1053 SUPERFAMILY Helical scaffold and wing domains of SecA 771 873 IPR036266 -
Alju08g0358 1053 SMART SecA_PP_bind_2 291 402 IPR011130 GO:0016020|GO:0017038
Alju08g0358 1053 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 312 IPR014001 -
Alju08g0358 1053 FunFam Preprotein translocase SecA subunit 292 412 - -
Alju08g0358 1053 NCBIfam preprotein translocase subunit SecA 88 861 IPR000185 GO:0005524|GO:0006605|GO:0006886
Alju08g0358 1053 SUPERFAMILY Helical scaffold and wing domains of SecA 944 1049 IPR036266 -
Alju08g0358 1053 Gene3D - 82 459 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0358 Alju-ChrAlju08 2590626 2601332 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0358 08 2590626 2601332 Alju08g0358 08 2590626 2601332 ECH