Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0296 ATGCGTTCCCGAGGCATGGATCCCGATGAGGATGAGTATGGGGAGGAATACGACGATGACCAAGCGGTCGATGACGACGAAGCGGGAGTGGAGGAGGACGACGAAGCGGAAGGGGAGGAGGAGGAGGCCGACAGAGGAGTCTCCAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGACGCCGAGGAGGTCGACGAGGACGAGGATGAGGAGGAGGATGATGAGGATGATTTTGATGCAAGAGGCGGTCGAAAGCGCCAATACAAGAGACGTGATGCTTATAATTTCTTCGATGAAGAGGCAAAGGTGGACAGCGATGAGGAAGAGGAAGAGGAAGAAGGCGAGGACGATTTCATCGTCGAAGAAGGAACTGATCTACCAGATGAAGATGGTGGAAGGAGGATGCATAGCCGCCGTATGCTGCCCCATGATCAAGAAGACCATGAAGACCTTGAAGCAATGGCAAGGAGCATTCAAGAAAGATATGGAAGGCGTGTTACAGATTATGATGAAGAAGCTACAGATGTAGAGCAGCAAGCACTTCTGCCATCTGTGAGAGATCCAAAATTGTGGATGGTTAAATGTGCGATTGGTCGTGAGCGTGAGGCGGCTGTTTGCCTTATGCAAAAATATATTGATAAAGGGTCTGAACTGCAAATAAGGTCTGCTGTTGCTCTTGATCATCTCAAAAATTATATATATGTTGAAGCTGATAAAGAAGCCCATGTGAGAGAGGCATGTAAAGGTCTACGCACCATATTTACCCAGAAGATAACACTTGTTCCAATCAGAGAGATGACTGATGTTCTTTCAGTTGAAAGCAAAGCTATTGATCTTTCTAGAGATACATGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTTGCAAAAGTTGTTGATGTTGATAATGTACGGCAGAGGGTTACTGTGAAATTGATTCCGAGGATAGACTTACAAGCTCTAGCAAATAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAAGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGATGAAGCTAGGGAACTACATATCCGTGTGGAGCATAGACGTGACCCCATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGACGGTTTCTTGTACAAAACAGTATCAATAAAGTCAATCAGCGCTCAAAATATCAAACCTACGTTTGATGAACTTGAAAAGTTTCGAAAACCGGGTGAGAATGGAGATGGGGATGTAGCTAGTCTGTCAACATTATTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTTATTGTCATCAAGGGAGATCTAAAGAATTTGAAGGGGTGGGTAGAGAAAGTTGATGAGGATAATGTTCATATAAGGCCAGAAATCAAGGGCCTTCCAAAAACTCTCGCTGTAAATGAAAGGGAACTTTGTAAATACTTTGAACCTGGGAACCATGTTAAAGTTGTTTCTGGCACACAAGAAGGGGCTACTGGTATGGTGGTGAAGGTGGAGCAGCATGTTCTGATTATTTTATCTGATACAACAAAAGAACATATTCGTGTATTTGCTGATGATGTTGTGGAGAGTTCTGAAGTCACCACAGGAGTTACAAGAATTGGGGACTATGAGCTCCATGATCTTGTCCTGCTAGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCCTTTCAGGTTCTCAAGGGAGTTCCTGACAGGCCTGAAGTTGCACTGGTGAAATTAAGGGAAATCAAGTGCAAGATTGACAAAAAAATAAGTGTGCAGGATAGGTTTAAGAATACAGTATCAACAAAGGATGTTGTACGGATAGTTGAGGGTCCATGCAAAGGCAAACAAGGACCAGTGGAGCACATATATAGGGGAGTTTTGTTCATATATGATCGACATCATCTTGAACATGCTGGCTTTATATGTTCAAAAGCTCAATCATGTTTGGTTGTGGGGGGTTCACGGTCCCATGGCGATAGAAATGGTGATGCCTACTCAAGATTTCCCAGCCTTAGAACTCCACCTCGAATCCCACAATCTCCTAGGAGGTTTTCTCGAGGAGGGCCACCAATTAATTCTGGAGGAAGGCATAGAGGTGGAAGAGGGCATGATGGATTGGCTGGCGCAACAGTTAAAATTCGCCAAGGTCCCTATAAAGGTTATCGTGGGCGTGTTATAGAAGTTAATGGCACATCAGTTCGGGTTGAACTGGAGTCCCAAATGAAAGTTGTGACAGTTGATCGTAACCATATTTCTGATAATGTGGCTGTAACCCCGTATCGTGAGCCATCACGGTATGGAATGGGAAGTGAGACCCCAATGCACCCCTCTCGAACTCCTTTACATCCTTATATGACTCCTATGAGAGATCCTGGAGCGACACCTATTCACGATGGGATGAGAACTCCCATGCGAGATAGGGCATGGAATCCTTACACTCCCATGAGTCCTCTAAGGGATAATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGTACCAGTCCACAATACCAGCCAGGGAGTCCTCCTTCACGAATGTATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGTACTCCTGGTGGCAATTACAGCGAAGCAGGGACACCTAGGGACAATTCTGCCTATGCCAATGCTCCAAGCCCATATTTACCATCAACACCAGGTGGACAGCCTATGACACCAAACTCAGCATCTTATCTTCCCGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCGGTTATAGGTGCAGACAGTGAAGGACCTTGGTTTATGCCAGATATATTGGTCAATGTGCGCCGAGCTGGAGAGGAATCTATTGTGGGAATAATAAGGGAGGTGCTTCCGGACGGATCTTGCAGGGTAGCCCTGGGATCAAGTGGAAATGGTGAAACAATAACAGCTCTTCCCAGCGAAATGGAGGCTGTAGTACCGAGGAAATCAGACAAGATAAAGATTATGGGTGGGGCTCTCCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGCACTGATGGTATTGTAAAGGTAGATGATACACTGGATGTGAAGATTTTAGACTTAGTCATTCTAGCTAAACTAGCTCAATCGTGA 3144 0.4564 MRSRGMDPDEDEYGEEYDDDQAVDDDEAGVEEDDEAEGEEEEADRGVSRKRRRSGFIDDDAEEVDEDEDEEEDDEDDFDARGGRKRQYKRRDAYNFFDEEAKVDSDEEEEEEEGEDDFIVEEGTDLPDEDGGRRMHSRRMLPHDQEDHEDLEAMARSIQERYGRRVTDYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAVALDHLKNYIYVEADKEAHVREACKGLRTIFTQKITLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTVSTKDVVRIVEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICSKAQSCLVVGGSRSHGDRNGDAYSRFPSLRTPPRIPQSPRRFSRGGPPINSGGRHRGGRGHDGLAGATVKIRQGPYKGYRGRVIEVNGTSVRVELESQMKVVTVDRNHISDNVAVTPYREPSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPLRDNNWEDGNPGSWGTSPQYQPGSPPSRMYEAPTPGAGWASTPGGNYSEAGTPRDNSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGADSEGPWFMPDILVNVRRAGEESIVGIIREVLPDGSCRVALGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0296 1047 MobiDBLite consensus disorder prediction 126 145 - -
Alju08g0296 1047 Pfam KOW motif 716 746 IPR005824 -
Alju08g0296 1047 Pfam KOW motif 485 512 IPR005824 -
Alju08g0296 1047 ProSitePatterns Ribosomal protein L24 signature. 434 451 IPR005825 GO:0003735|GO:0005840|GO:0006412
Alju08g0296 1047 Gene3D - 278 320 IPR014722 -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 898 912 - -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 810 923 - -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 42 59 - -
Alju08g0296 1047 CDD NGN_Euk 189 271 IPR039385 -
Alju08g0296 1047 Gene3D - 485 534 IPR014722 -
Alju08g0296 1047 FunFam Transcription elongation factor SPT5 278 320 - -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 10 41 - -
Alju08g0296 1047 Pfam Spt5 transcription elongation factor, acidic N-terminal 96 183 IPR022581 -
Alju08g0296 1047 FunFam Transcription elongation factor SPT5 699 762 - -
Alju08g0296 1047 CDD KOW_Spt5_3 482 532 IPR041976 -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 60 77 - -
Alju08g0296 1047 Gene3D - 425 482 IPR014722 -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 101 125 - -
Alju08g0296 1047 Gene3D - 699 762 IPR014722 -
Alju08g0296 1047 FunFam Transcription elongation factor SPT5 169 271 - -
Alju08g0296 1047 Pfam Early transcription elongation factor of RNA pol II, NGN section 189 270 IPR005100 -
Alju08g0296 1047 SMART nusgn_4 187 273 IPR006645 GO:0140673
Alju08g0296 1047 MobiDBLite consensus disorder prediction 870 889 - -
Alju08g0296 1047 CDD KOW_Spt5_6 988 1045 IPR041980 -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 1 145 - -
Alju08g0296 1047 SUPERFAMILY Translation proteins SH3-like domain 474 533 IPR008991 -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 78 100 - -
Alju08g0296 1047 FunFam Transcription elongation factor SPT5 485 534 - -
Alju08g0296 1047 FunFam Transcription elongation factor SPT5 425 482 - -
Alju08g0296 1047 PANTHER SUPPRESSOR OF TY 5 80 1024 IPR039659 GO:0006357|GO:0032784
Alju08g0296 1047 CDD KOW_Spt5_5 714 760 IPR041978 -
Alju08g0296 1047 SMART kow_9 606 633 IPR005824 -
Alju08g0296 1047 SMART kow_9 278 305 IPR005824 -
Alju08g0296 1047 SMART kow_9 994 1021 IPR005824 -
Alju08g0296 1047 SMART kow_9 712 739 IPR005824 -
Alju08g0296 1047 SMART kow_9 482 509 IPR005824 -
Alju08g0296 1047 SMART kow_9 430 457 IPR005824 -
Alju08g0296 1047 CDD KOW_Spt5_2 431 481 IPR041975 -
Alju08g0296 1047 MobiDBLite consensus disorder prediction 667 715 - -
Alju08g0296 1047 CDD KOW_Spt5_4 610 652 IPR041977 -
Alju08g0296 1047 Gene3D - 169 271 IPR036735 GO:0006355
Alju08g0296 1047 MobiDBLite consensus disorder prediction 834 849 - -
Alju08g0296 1047 CDD KOW_Spt5_1 282 319 IPR041973 -
Alju08g0296 1047 PIRSF Spt5 3 1047 IPR017071 GO:0006357|GO:0032784
Alju08g0296 1047 SUPERFAMILY Translation proteins SH3-like domain 423 461 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0296 Alju-ChrAlju08 2164504 2171293 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0296 08 2164504 2171293 Alju08g0296 08 2164504 2171293 ECH