Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0268 ATGCCAAAAAAAATTGTAACCCCTTCCCTGATAGGCTGTTATTCATTATTTTCTATCTTGTCCCAGCATATCCAGATCGCGTCCAATATTCGCGGACAAGAAATAGGCAATAATTCGCACAAGCACGGGGTCAGAAGCCGGCGCCAATTTTTCCAAGATAAGGTTACTTCCCCTCCTTCGCTTTGTGGTTTCCACGGCCTCTCTTCTCTCTTCCCTCTTCCCACAGCTCCAAAGAGAGAGGAGAATTCAACTTATTCAACCCTAACAATGGCTACACTTCAAGCTTCACTTCTCTGCAAACCTTGCCTCTCCTTCACGTCTCACTCGCCCCCAAAGCAACGACTTCTTCATTCTGCCTCTTCTACACTTCACCAATCCTCCACTATCCCTTTCAATCCGCTCACTCTCTCGCAGCCTTCCCTGCATGCTTTAAGCTCAAATTTTCGCAAGTTTCCATGTCGCCCGCGTGGTCCACCCGCCCCTTTCACATTTCGACCGGAGAACGAAACTTCGTGGTCGGAATCGAATTCTTTGGGAGATATTTCAAATTTAACTGGTAAAGAATCGGATGCCAATGAAAATGTTGGGGGAAGATTAAATGTTACGGGAGACAGTTCGGTTTCAGATTCAAAACAATCGAGTGTCGACGGTGCTGATGCTGGAAGCTCCCATATTGAGTTGCAGGGTGATGCAGGGGAATTAGCTGTGGAGGCTGATGAAGTGGGAAGTGAGAAACGCGTAGAACAAGAAGAAAAGAGTACACATTTGGAGGAAAAGGAGGTTGGCAATGCTGGATTGCCTATAGTGGTGTTCTTGGTGGGTCTGTGGGCGAGGGCGAGGGATGTACTTCAGAAGGCTTTCTCTGATTTCTTAAATTGGTGGCCTTTTTGGCGGCAGGAGAAACATTTGGCGCGGTTGATTGCTGAGGCTGACGCAAATCCTCAAGATGCGACAAAGCAGAGTGCTCTACTTGCTGAACTCAACAAGCACAGTCCGGAGTCTGTCATCAAACGTTTTGAAGAAAGGGATCGTGCTGTAGACAGCAGAGGAGTTGTAGAATATCTCCGAGCTCTTGTGGCAACTAATGTTATTGCTGAATATCTTCCTGATGAGAAATCTGATAAACCTTCTAGTCTTCTCACCTTGTTGCAAGAATTAAAGCAGCGGGCATCAGGTAACATGGATGAGCCTTTTCTAAATCCTGGAATCTCTGAGAAGCAGCCGTTGCATGTGGTTATGGTTGAACCAAAGGTATCAAACAAGTCTCGTTTTGCACAAGAGCTTATTTCAACCATCTTGTTTACCATTGCTGTGGGATTGGTTTGGTTTATGGGGGCTGCTGCACTTCAAAAATACGTTGGAAGCTTAGGTGGGATTGGAACTTCAGGTGTTGGCTCAAGTTCTTCATATTCCCCAAAGGAGTTGAATAAGGAAGTGATGCCAGAGAAGAATGTTAAAACATTCAAAGATGTGAAAGGCTGTGATGATGCAAAGCAAGAGCTCGAGGAAGTTGTGGAGTATCTAAAAAATCCATCTAAATTTACACGCCTTGGAGGAAAGTTGCCTAAGGGGATTCTCTTGACAGGAGCACCTGGAACCGGAAAAACCCTGCTAGCCAAGGCAATTGCTGGAGAAGCAGGTGTTCCTTTTTTCTATAGGGCTGGATCTGAATTTGAGGAAATGTTTGTTGGGGTTGGTGCTCGACGAGTAAGGTCGTTATTTCAAGCAGCCAAAAAGAAGGCTCCCTGTATTATATTTATTGATGAAATAGATGCTGTTGGATCAACAAGGAAACAGTGGGAGGGCCACACAAAGAAGACATTACATCAACTACTTGTCGAAATGGATGGCTTTGAACAGAATGAGGGGATAATATTGATGGCAGCTACAAACTTGCCAGATATTCTTGATCCAGCCTTAACAAGGCCTGGTAGATTTGATCGACATATTGTGGTGCCAAATCCAGATGTACGCGGTCGCCAAGAAATTTTGGAGCTCTACTTGCAAGACAAACCTTTAGCTGAAGATGTAGATGTGAAAACATTAGCTCGTGGGACACCAGGATTTAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCCGTTGAGGGTGCAGAGAAATTGACAGCTGCACAGTTGGACTTTGCAAAGGACAGGATAATCATGGGAACAGAGCGTAAAACAATGTTCATATCAGAGGATTCAAAAAAGCTTACTGCTTATCATGAGAGTGGGCATGCAATTGTTGCCTTAAATACTGAGGGTGCGCATCCAATTCACAAGGCAACAATCATGCCACGTGGATCTGCCTTAGGAATGGTCACCCAACTACCCTCAAATGATGAGACGTCAATCAGCAAGAAGCAGTTATTAGCGCGCCTTGATGTTTGCATGGGAGGAAGAGTCGCCGAAGAGCTTATCTTTGGTCAGGATCATATAACAACTGGCGCAAGTAGTGATCTTCACACAGCAACTGAGCTTGCCCAATATATGGTCTCAAATTGTGGTATGAGTGATGCAATTGGACCAGTTCATATAAAGGAGAGACCAAGTTCTGAAATGCAATCACGGATTGATGCAGAGGTTGTGAAACTCCTTAGAGAAGCATATGACCGTGTAAAAGCCCTTTTAAAGAAGCATGAGAAGGCATTACATGCACTGGCCAATGCATTATTAGAATACGAGACACTTGGTGCCGAAGAGATAAGGAGAATACTTCTCCCATACGGGGAAGGACGGTTGCCAGAGCAACAGGAACAAGAAGCAGAAGGGGAGCTAGTCTTAGCCTGA 2805 0.451 MPKKIVTPSLIGCYSLFSILSQHIQIASNIRGQEIGNNSHKHGVRSRRQFFQDKVTSPPSLCGFHGLSSLFPLPTAPKREENSTYSTLTMATLQASLLCKPCLSFTSHSPPKQRLLHSASSTLHQSSTIPFNPLTLSQPSLHALSSNFRKFPCRPRGPPAPFTFRPENETSWSESNSLGDISNLTGKESDANENVGGRLNVTGDSSVSDSKQSSVDGADAGSSHIELQGDAGELAVEADEVGSEKRVEQEEKSTHLEEKEVGNAGLPIVVFLVGLWARARDVLQKAFSDFLNWWPFWRQEKHLARLIAEADANPQDATKQSALLAELNKHSPESVIKRFEERDRAVDSRGVVEYLRALVATNVIAEYLPDEKSDKPSSLLTLLQELKQRASGNMDEPFLNPGISEKQPLHVVMVEPKVSNKSRFAQELISTILFTIAVGLVWFMGAAALQKYVGSLGGIGTSGVGSSSSYSPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAEDVDVKTLARGTPGFNGADLANLVNIAAIKAAVEGAEKLTAAQLDFAKDRIIMGTERKTMFISEDSKKLTAYHESGHAIVALNTEGAHPIHKATIMPRGSALGMVTQLPSNDETSISKKQLLARLDVCMGGRVAEELIFGQDHITTGASSDLHTATELAQYMVSNCGMSDAIGPVHIKERPSSEMQSRIDAEVVKLLREAYDRVKALLKKHEKALHALANALLEYETLGAEEIRRILLPYGEGRLPEQQEQEAEGELVLA 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0268 934 SMART AAA_5 521 656 IPR003593 GO:0016887
Alju08g0268 934 SUPERFAMILY FtsH protease domain-like 736 914 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Alju08g0268 934 Coils Coil 868 902 - -
Alju08g0268 934 FunFam ATP-dependent zinc metalloprotease FtsH 729 917 - -
Alju08g0268 934 ProSitePatterns AAA-protein family signature. 624 642 IPR003960 GO:0005524|GO:0016887
Alju08g0268 934 Gene3D - 655 728 - -
Alju08g0268 934 MobiDBLite consensus disorder prediction 166 219 - -
Alju08g0268 934 Pfam AAA+ lid domain 676 716 IPR041569 -
Alju08g0268 934 CDD RecA-like_FtsH 487 652 - -
Alju08g0268 934 Gene3D - 465 654 IPR027417 -
Alju08g0268 934 MobiDBLite consensus disorder prediction 237 258 - -
Alju08g0268 934 MobiDBLite consensus disorder prediction 152 224 - -
Alju08g0268 934 NCBIfam ATP-dependent zinc metalloprotease FtsH 414 907 IPR005936 GO:0004176|GO:0004222|GO:0016020
Alju08g0268 934 MobiDBLite consensus disorder prediction 238 258 - -
Alju08g0268 934 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 928 IPR005936 GO:0004176|GO:0004222|GO:0016020
Alju08g0268 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 756 IPR027417 -
Alju08g0268 934 Gene3D Peptidase M41 729 915 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Alju08g0268 934 FunFam ATP-dependent zinc metalloprotease FTSH 11 472 654 - -
Alju08g0268 934 Pfam Peptidase family M41 735 910 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Alju08g0268 934 Pfam ATPase family associated with various cellular activities (AAA) 525 653 IPR003959 GO:0005524|GO:0016887
Alju08g0268 934 FunFam ATP-dependent zinc metalloprotease FtsH 655 729 - -
Alju08g0268 934 PANTHER METALLOPROTEASE M41 FTSH 251 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0268 Alju-ChrAlju08 1941307 1949559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0268 204 913 Miscellaneous Gene Families AT5G53170 79.945 0.0 1138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0268 08 1941307 1949559 Alju08g0268 08 1941307 1949559 ECH