Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0234 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGAGTATGACTCAGAGACCTTGGCTAGGACCAGACCTCGGTATAATCACCACTACGCAAGTAGTACCCACCGTCATCGCGGTGGCGGCAGTGGTGCTCGACCTAAGGCGCAAGACTCATCTTTAACGGTGACCACAAGTTACCGCATTTTGTGCCACGATATCAAGGCTGGTGGAGTAATTGGCAAGTCAGGTAGCATTATAAAGTCTATTAGACAACACACCGGCGCGTGGATCAACGTGCACGAGCTGATCCCTGGCGATGAGGAACGAATCATAGAGATTTCTGACACGCGCCGGCGAGACCCAGAAGGCCGAATGCCATCGTTCTCGCCGGCGCAGGAGGCCTTGTTGTTGATTCATGAGAGAATTCTTGAGAGCGATGCTGCGTTTGGGATTGGCGAAGAGGAGGAGGATTATGGGGGCAGGGGAGGCGGGAGCAGCAGCCGAGTCGCCACTAGACTGGTGGTGTCCAGAATGCATGTGGGGTGCTTGTTGGGCAAAGGAGGGAAGATTATTGAACAAATGAGAATTGAAACCAAGACACAGATTAGGATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCCGAAGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATAGCACTTATATCATCACGCTTGAGGGAAAGCCAACATCGTGACCGCAGTCATTTTCATGGACGAGCACATTCGCCGGAGCGTTTTTTCCCTCCAGATGATGATTATATTCCTCACGGGGCAGCTCGTAGATCCTCTATGGATGGGGCAACTTTTGGATCACGAATATCTACTGCCAATATAAGAAGCAATAGCTATCAGTCATTAGGTTATACAGTGGAACCTGGGGCTCCTCCTGTAGCTGACGATGCACAACCCCTTTATGGTGAAGACCTCATTTTCCGGATTCTTTGTCCACTGGACAAAGTGGACCGTATTATAGGGGAATCAGAAGAATTTGTAGAGTTCCTTCAAACTGAAGTTGGTGTCGATGTTAAGGTAGATGATCAGGTGGTTGGTTCAGATGAGCAGATAATCATAATTTCTTCGGATGAGGGTCCTGATGATGAGCTGTTCCCGGCTCAGGAAGCTTTGTTGCATATTCAAACACGCATTGTTGATCTTGAGCTAGATGATGACAACATTATAACCACCAGGCTTCTTGTTCCATCTAGTGACATTGATTGTTTAGATGGAAGAGATGTATCACTATTAGAGATAAGTAGACTCACTGACACAAATATTCAAATTCTCCCAAGAGAGCAGTTACCTCCCTGTGTTGCAAAAAATGATGAGCTGGTCCAGATTGTAGGTGAGATCAAAGCAGCTCGAGAAGCTATTCTTGAGGTGACATCAAGACTAAAAAATTATTTGTACAGAGATTTCTTTCAAAGGGACGCAGCACCGTCATCTGCTTCAGTACCTAATACGGAGGTATCTTCTTCCAGTAACATAGCTCCAGTTCATGAGGCTTACACTGGCACTGAAACTCCCATAACCTATCAGAATGTGCAACCTGTGGCAGCTGCACTTCCCTTAAAAGAAACGGGAGGATCTAGCACAGAGACAGGAAAGCAGAAAGAAGGTGATCGCCGTGATGATGTGATAAGTAGCTTGAATAGGATCCCTGTACCACTTGTCACTAGAAGTACACTTGAAGTGGTCATACCGGAGTACGCAATTCCAAAGCTTACAGCAAAGTCCAAAAGCAAGCTTGCTCAGATAAGTGAGTTGTCAGGAGCCACTGTAACACTTGTAGAGGATAGGCCGGAGGAGACACAAAAGATTATTCGGATATCTGGTACCCCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTCCAAGGATTCATTTTAAGCACACAAGAAGATGGACCCTAA 1944 0.464 MERSRSKRNYYYDQEYDSETLARTRPRYNHHYASSTHRHRGGGSGARPKAQDSSLTVTTSYRILCHDIKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEDYGGRGGGSSSRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDANAVKNAIALISSRLRESQHRDRSHFHGRAHSPERFFPPDDDYIPHGAARRSSMDGATFGSRISTANIRSNSYQSLGYTVEPGAPPVADDAQPLYGEDLIFRILCPLDKVDRIIGESEEFVEFLQTEVGVDVKVDDQVVGSDEQIIIISSDEGPDDELFPAQEALLHIQTRIVDLELDDDNIITTRLLVPSSDIDCLDGRDVSLLEISRLTDTNIQILPREQLPPCVAKNDELVQIVGEIKAAREAILEVTSRLKNYLYRDFFQRDAAPSSASVPNTEVSSSSNIAPVHEAYTGTETPITYQNVQPVAAALPLKETGGSSTETGKQKEGDRRDDVISSLNRIPVPLVTRSTLEVVIPEYAIPKLTAKSKSKLAQISELSGATVTLVEDRPEETQKIIRISGTPEQAERAQSLLQGFILSTQEDGP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0234 647 ProSiteProfiles Type-1 KH domain profile. 571 635 - -
Alju08g0234 647 Pfam KH domain 573 636 IPR004088 GO:0003723
Alju08g0234 647 Pfam KH domain 61 109 IPR004088 GO:0003723
Alju08g0234 647 Pfam KH domain 166 234 IPR004088 GO:0003723
Alju08g0234 647 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Alju08g0234 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 572 643 IPR036612 GO:0003723
Alju08g0234 647 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Alju08g0234 647 Gene3D K Homology domain, type 1 570 642 IPR036612 GO:0003723
Alju08g0234 647 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 50 263 - -
Alju08g0234 647 CDD KH-I_PEPPER_rpt2_like 166 238 - -
Alju08g0234 647 CDD KH-I_PEPPER_rpt1_like 58 131 - -
Alju08g0234 647 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723
Alju08g0234 647 Gene3D K Homology domain, type 1 160 242 IPR036612 GO:0003723
Alju08g0234 647 ProSiteProfiles Type-1 KH domain profile. 163 233 - -
Alju08g0234 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 244 IPR036612 GO:0003723
Alju08g0234 647 SMART kh_6 162 238 IPR004087 GO:0003676
Alju08g0234 647 SMART kh_6 570 640 IPR004087 GO:0003676
Alju08g0234 647 SMART kh_6 319 392 IPR004087 GO:0003676
Alju08g0234 647 SMART kh_6 403 477 IPR004087 GO:0003676
Alju08g0234 647 SMART kh_6 57 138 IPR004087 GO:0003676
Alju08g0234 647 MobiDBLite consensus disorder prediction 534 555 - -
Alju08g0234 647 MobiDBLite consensus disorder prediction 33 53 - -
Alju08g0234 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 397 484 IPR036612 GO:0003723
Alju08g0234 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 57 109 IPR036612 GO:0003723
Alju08g0234 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 374 IPR036612 GO:0003723
Alju08g0234 647 Gene3D - 320 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0234 Alju-ChrAlju08 1700637 1706237 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0234 08 1700637 1706237 Alju08g0234 08 1700637 1706237 ECH