Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g2377 ATGGAGGGCGGGACGCGGAACGTGGGGCGAGGATTGGAAAGCAATCACCTCTTCCGCGAGTCTTTGATTTCTCTTTCTACCCTCATCCGTACAGCAATGGCGACACCATCGTTGGACGAAGAAACCGCTAAGAAAGTGATACGACAAGTCGAGTTCTACTTCAGTGACAGCAACCTTCCCAGGGACAATTTTCTCAAGAAATGTATTGATGAAAGTAAAGATGGCATGGTTAGTTTGGCTTTGATTTGTTCTTTTACTCGGATGAGAAAACATCTTAATCTGGACGATGTAAAGCCGGATGAAGTCCCCGAAGATACTGTGAAAGCTGTTGCTGAGACTTTGAGGAAATCAGAATCCCTTAAGATCTCCGAGGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCTGAAACCAGAAGAGGTAATTGAGCAGGTGGACATCAGAACAATAGCTGCATCACCATTTGAATATGATGTGAAGCGAGATGATATAGAAGCATTCTTTGGTCAATCTGCCAAGGTGAATAGTGTCAGACTTCCTCGTCATGTTGGAGACAAAAGGTTCTTTTGTGGCACTGCTCTCATTGAGTTCGCAGCAGAAGAAGATGTTGGGAAAGTTTTGGGGCAAAAATTGGTCTATGCAGGAGCCGAGTTAGAATTGAAGTTGAAGAAAGACTTTGATGCAGAGAGAGCAAAGGAGTTAGAAGAGTATGAAAAATCTGGTGCACGTAATGGTTCAAATCACCAGAATAACTCAAATGCTGAAGCAGGCTATCCTAAGGGCTTAATTATTTCCTTCAAGCTAAAACGCATTTCAGATGTTGTTCCGCCAAGACAAAATGGTGCTCATCAAGAAGCCAATGGCAACAGCAGTGTCTCTGACAAAGATGAACAAAATCCTTCCGAGGGTGTTGTTGAGGTTAATGAACAAAAGGTATCAGATAACACTGACAATGATAAAGAACAAGAGGTCAATGAAGGAAACGAAACTAAAGGTGAAGAAAAGATTCAAGAAAGTGAAGTAGAACTTTCAGCTCATGCTTACAAGGACAACATGGACGTGGTGTTACGTGAGGATTTGAAGGGCGTATTTGAGAAGTTTGGTTCTGTGAAGTTTGTTGATTTCAAGATGGGAGCAGATTCTGGATACATCCGCTTTGAAGAACCTGAAGCTGCTCAAAAAGCTCGCGCTGCCGCAGTTCTTGCTGAAAAGGGGGGTCTGGCTGTGAAGAATTTTATTGCTACTCTAGATCCAGTGTCTGGCGATGCTGAAAGGGAATACTGGAGCCTTCTCCGTGGTAATCAAGAAAAGCACCGAGACAATAGGAACACCAGAGGAAGGGGAGGAGGAAGGCGCGGCAGAGGGGGGAAACATGCCCGCTCTAGAGAGAATGAATCTCCAATGGGTCGCCCAAATAAAGCTCAGAGAGTTGGGGCAGCTTAA 1443 0.4435 MEGGTRNVGRGLESNHLFRESLISLSTLIRTAMATPSLDEETAKKVIRQVEFYFSDSNLPRDNFLKKCIDESKDGMVSLALICSFTRMRKHLNLDDVKPDEVPEDTVKAVAETLRKSESLKISEDGKKVGRTTELLKPEEVIEQVDIRTIAASPFEYDVKRDDIEAFFGQSAKVNSVRLPRHVGDKRFFCGTALIEFAAEEDVGKVLGQKLVYAGAELELKLKKDFDAERAKELEEYEKSGARNGSNHQNNSNAEAGYPKGLIISFKLKRISDVVPPRQNGAHQEANGNSSVSDKDEQNPSEGVVEVNEQKVSDNTDNDKEQEVNEGNETKGEEKIQESEVELSAHAYKDNMDVVLREDLKGVFEKFGSVKFVDFKMGADSGYIRFEEPEAAQKARAAAVLAEKGGLAVKNFIATLDPVSGDAEREYWSLLRGNQEKHRDNRNTRGRGGGRRGRGGKHARSRENESPMGRPNKAQRVGAA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g2377 480 CDD LA_like_plant 42 131 - -
Alju07g2377 480 SMART rrm1_1 346 410 IPR000504 GO:0003723
Alju07g2377 480 SMART rrm1_1 149 221 IPR000504 GO:0003723
Alju07g2377 480 MobiDBLite consensus disorder prediction 431 447 - -
Alju07g2377 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 225 IPR000504 GO:0003723
Alju07g2377 480 Gene3D - 333 447 IPR012677 -
Alju07g2377 480 Gene3D - 141 239 IPR012677 -
Alju07g2377 480 Pfam La domain 46 116 IPR006630 -
Alju07g2377 480 SUPERFAMILY RNA-binding domain, RBD 139 224 IPR035979 GO:0003676
Alju07g2377 480 Pfam RNA binding motif 355 447 IPR014886 GO:0003723
Alju07g2377 480 ProSiteProfiles xRRM domain profile. 334 460 IPR014886 GO:0003723
Alju07g2377 480 FunFam La protein 2 38 138 - -
Alju07g2377 480 Gene3D - 38 138 IPR036388 -
Alju07g2377 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 207 IPR000504 GO:0003723
Alju07g2377 480 CDD RRM1_La 149 221 - -
Alju07g2377 480 SMART la 40 132 IPR006630 -
Alju07g2377 480 MobiDBLite consensus disorder prediction 282 311 - -
Alju07g2377 480 MobiDBLite consensus disorder prediction 237 256 - -
Alju07g2377 480 MobiDBLite consensus disorder prediction 312 338 - -
Alju07g2377 480 MobiDBLite consensus disorder prediction 277 338 - -
Alju07g2377 480 PANTHER LUPUS LA PROTEIN-RELATED 304 469 IPR045180 -
Alju07g2377 480 SUPERFAMILY "Winged helix" DNA-binding domain 37 137 IPR036390 -
Alju07g2377 480 SUPERFAMILY RNA-binding domain, RBD 357 442 IPR035979 GO:0003676
Alju07g2377 480 ProSiteProfiles La-type HTH domain profile. 36 141 IPR006630 -
Alju07g2377 480 PRINTS Lupus La protein signature 49 66 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Alju07g2377 480 PRINTS Lupus La protein signature 75 90 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Alju07g2377 480 PRINTS Lupus La protein signature 189 207 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Alju07g2377 480 MobiDBLite consensus disorder prediction 431 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g2377 Alju-ChrAlju07 49536576 49540263 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2377 07 49536576 49540263 Alju07g2377 07 49536576 49540263 ECH