Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1882 ATGGCTCCCATCCCTACGCTCTCCATATTCTGTCTCTGCCTTTGCTTCTTCCCATTCTCGTCAACATCCGCTGCTCTGCTTTTTCAGGGCTTCAACTGGGAATCAAGTAACAAAGGAGGATGGTACAACTCCCTCAAGAACTCCATTTCTGACCTTTCCAATTCAGGAATTACCCACGTTTGGCTCCCTCCTCCTTCTCAATCTGTTTCTCCTCAAGGATACCTTCCGGGGAGGCTGTACGATTTGGATGCATCAAAATATGGTTCCAAGGATGAATTAAAGTCACTGATCGCAGCTTTCCATGAAAAGGGAATCAAATGTCTGGCTGACATTGTCATCAACCACAGAACTGCAGAGAGTAAGGACGGAAGAGGAATTTACTGCATCTTCGAAGGTGGCACACCTGATTCGCGTCTCGACTGGGGCCCATCTTTCATCTGCAAAGACGACACTGCGTATTCTGATGGCACCGGAAATGCTGACAGTGGAGACCCATACGACGCCGCACCGGACATCGACCATCTCAACCCTCAAGTTCAGTCAGAGCTCTCCGATTGGATGAATTGGCTGAAGACGGAAGTAGGGTTTGATGGATGGCGATTCGATTTCGTAAAGGGCTATGCCCCAAGTATCACCAAGATTTACATGGAACGAACCTCGCCGGACTTCGCCGTCGGGGAAAAATGGGACACTATGCCTTCTGGGCAGGACGGGAAGCCTCAGAGTAATCAAGACGCTCATCGTGGTGCGTTGGTGAATTGGGTGGAGGAGGCCGGCGGAGATGTCACCGCCTTTGATTTCACGACCAAAGGGATCCTTCAGGCCGCCGTACAAGGGGAGCTATGGAGGTTGAAGGACTCGAACGGGAAGCCGCCGGGAATGATCGGGACAAAGCCAGAAAATGCGGTGACCTTTATTGACAATCACGACACAGGTTCCACTCAGAAACTGTGGCCATTCCCTCAAGATAAAGTAATGCAGGGATACGCATACATTCTAACTCATCCTGGAATACCATCAATATTCTATGATCACTTTGTGGACTGGGGGCTGAAGGAGGAGATAGGGAAATTGAGTGGGATAAGGACGAAGAACGGGATGAACGAGAAGAGCAGCGTGAAGATATTAGCAGCAGAAGCAGAACTATACATGGCAAGTATAGATGAGAAAGTGATACTGAAGATTGGATCAAAGATGGAGCCAGAAGGTGCTGTTCCTTCTAACTTCCAACTCGCTGCCTCGGGCCAAGACTATGCTGTGTGGCAGAAATCTTGA 1275 0.4941 MAPIPTLSIFCLCLCFFPFSSTSAALLFQGFNWESSNKGGWYNSLKNSISDLSNSGITHVWLPPPSQSVSPQGYLPGRLYDLDASKYGSKDELKSLIAAFHEKGIKCLADIVINHRTAESKDGRGIYCIFEGGTPDSRLDWGPSFICKDDTAYSDGTGNADSGDPYDAAPDIDHLNPQVQSELSDWMNWLKTEVGFDGWRFDFVKGYAPSITKIYMERTSPDFAVGEKWDTMPSGQDGKPQSNQDAHRGALVNWVEEAGGDVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGMIGTKPENAVTFIDNHDTGSTQKLWPFPQDKVMQGYAYILTHPGIPSIFYDHFVDWGLKEEIGKLSGIRTKNGMNEKSSVKILAAEAELYMASIDEKVILKIGSKMEPEGAVPSNFQLAASGQDYAVWQKS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1882 424 PANTHER ALPHA-AMYLASE 27 422 - -
Alju07g1882 424 Gene3D Glycosidases 26 366 - -
Alju07g1882 424 SMART aamy 25 362 IPR006047 GO:0005975
Alju07g1882 424 Pfam Alpha-amylase C-terminal beta-sheet domain 365 422 IPR012850 GO:0004556|GO:0005509|GO:0005975
Alju07g1882 424 SUPERFAMILY (Trans)glycosidases 25 354 IPR017853 -
Alju07g1882 424 Gene3D - 367 424 IPR013780 -
Alju07g1882 424 PRINTS Alpha-amylase signature 196 207 IPR006046 GO:0004556|GO:0005975|GO:0043169
Alju07g1882 424 PRINTS Alpha-amylase signature 104 115 IPR006046 GO:0004556|GO:0005975|GO:0043169
Alju07g1882 424 PRINTS Alpha-amylase signature 300 312 IPR006046 GO:0004556|GO:0005975|GO:0043169
Alju07g1882 424 CDD AmyAc_arch_bac_plant_AmyA 27 373 - -
Alju07g1882 424 SMART alpha-amyl_c2 363 423 IPR012850 GO:0004556|GO:0005509|GO:0005975
Alju07g1882 424 Pfam Alpha amylase, catalytic domain 53 343 IPR006047 GO:0005975
Alju07g1882 424 PIRSF Alpha-amylase_plant 3 424 IPR013775 GO:0004556|GO:0005509|GO:0005975
Alju07g1882 424 SUPERFAMILY Glycosyl hydrolase domain 368 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju07g1882 Alju-ChrAlju07 45141503 45143076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju07g1882 1 423 Glycoside Hydrolase AT4G25000 66.511 0.0 571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1882 07 45141503 45143076 Alju07g1882 07 45141503 45143076 ECH