Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju07g1341 ATGGCGACTGAACCTCCTTCTTCACTTCCTCCTTACCCAGAGATGATAATGAAAGCTCTGGAGGCTCTGAACGAATCGACTGGTTCGAGCAAGTCGTCGATCCAGAAGCACATAGAGGCCACCTACGGCGAGTTACCGGCGAGTCACGCGGCGTTGCTTTCTCACCACCTGAACAAGATGAAGGATGCCGGGGAGCTTGTGTTCGCGAAGAACAACTACATGAAGCCCGACCCTAATGCCCCACCCAAGAGGGGTCGGGGCAGGCCACCCAAGCCCAAGGCTCCTCTGCCTCCGGGTACCGTCCTTTCTCCACCAAGGCCCAGAGGGCGTCCACCCAAGGACCCAAATGCCCAACCCAAGCCGAAAGCCTCAACCGGCAGTGGCAGGCCCAGAGGAAGGCCCAAGAAGGCGGCCCGGACATCACCGGAGAGTGGGCCTGTTGTGAGTAGGGGAAGAGGCCGGCCCCCGAAGGAGAAGCCCGCATTGACTGAAGTGAGCGTTGAACAATAG 510 0.5941 MATEPPSSLPPYPEMIMKALEALNESTGSSKSSIQKHIEATYGELPASHAALLSHHLNKMKDAGELVFAKNNYMKPDPNAPPKRGRGRPPKPKAPLPPGTVLSPPRPRGRPPKDPNAQPKPKASTGSGRPRGRPKKAARTSPESGPVVSRGRGRPPKEKPALTEVSVEQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju07g1341 169 PANTHER HISTONE H1 8 160 - -
Alju07g1341 169 Pfam AT hook motif 128 138 IPR017956 GO:0003677
Alju07g1341 169 Pfam AT hook motif 150 160 IPR017956 GO:0003677
Alju07g1341 169 Pfam AT hook motif 83 91 IPR017956 GO:0003677
Alju07g1341 169 Pfam AT hook motif 105 116 IPR017956 GO:0003677
Alju07g1341 169 MobiDBLite consensus disorder prediction 69 169 - -
Alju07g1341 169 PRINTS High mobility group protein (HMGY) signature 96 107 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Alju07g1341 169 PRINTS High mobility group protein (HMGY) signature 81 93 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Alju07g1341 169 PRINTS High mobility group protein (HMGY) signature 107 118 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Alju07g1341 169 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 8 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju07g1341 169 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Alju07g1341 169 PRINTS AT-hook-like domain signature 126 136 IPR017956 GO:0003677
Alju07g1341 169 PRINTS AT-hook-like domain signature 103 114 IPR017956 GO:0003677
Alju07g1341 169 SUPERFAMILY "Winged helix" DNA-binding domain 5 84 IPR036390 -
Alju07g1341 169 MobiDBLite consensus disorder prediction 91 118 - -
Alju07g1341 169 FunFam HMG-Y-related protein A 4 86 - -
Alju07g1341 169 Pfam linker histone H1 and H5 family 10 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju07g1341 169 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Alju07g1341 169 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Alju07g1341 169 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Alju07g1341 169 SMART AT_hook_2 149 161 IPR017956 GO:0003677
Alju07g1341 169 Gene3D - 5 87 IPR036388 -
Alju07g1341 169 SMART h15plus2 6 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju07g1341 169 MobiDBLite consensus disorder prediction 152 169 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1341 07 38642947 38643611 Alju07g1341 07 38642947 38643611 CCT
Alju07g1341 07 38642947 38643611 Alju07g1341 07 38642947 38643611 ECH