Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2525 ATGGTGTTTCTTTGTGGAGGTAAGAGAGTGAAAGCGAGCAAAGGCATGAAGGCGACACTGAGATACTTAGCAGGAGTGGCTGGGCCTAGTGGTTATGGCTCTAATTCAACAGCCGAGCAAGTCACTGAAGATTGCTCTAATTGCTTTCTCTCTTCTCATCTAACTGCTCTTATCACAGGTGGGACTTCTGGGATTGGAGCTGAAACAGCAAGAGTATTGGCTAAGAGAGGAGTGAGAGTAGTGATTGGAGCGAGGAACTTGAAAAAGGCGAGAGAAGTGAGACAAAATATACAGAAAGAAACTCCAAAGGCAGAGATTATAGTGTTGGAAATCGATCTCAGTTCTTTTGCTTCTGTACAGAGATTTTGTTCTGAGTTTTTGGCTCTACAACTTCCTCTCAATATCCTCATAAACAATGCGGGAATATTCTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATTGAGATGACGTTTGCCACCAACTACTTGGGACATTTTTTGTTGACAGAAATGCTGATAGAGAAAATGATAGAAACAGCAGAGAAGAGTGGGATTGAAGGAAGGATCATAAATGTGTCATCTGTGATCCATAGCTGGGTCAAGAGAGATGCTTTTCATTTCCACCACTTGCTCAATGGAACAAAATATAATGGCACACGTGCATATGCCCAATCAAAATTGGCCAATATTTTGCATGCCAAGGAATTGGCCAGACAGCTTAAGACAAGGAATGCAAAAGTAACAGTGAATTCTGTTCATCCGGGGATTGTGAAGACCGGAATTATAAGAGCTCATAAAGGCCTTATAACAGATTCCCTATTCTTCATTGCATCCAAGTTGCTCAAATCAACATCTCAGGGAGCAGCAACAACGTGTTACGTTGCAGTGAGTGCAAAAACACAAGGGTTGAGTGGGAAATACTTCGCAGATTGTAATGAGAGTAACTGCTCAAGTCTAGCAAACGATGAACTTGAAGCTCAGAAGCTATGGAACAACACTCAAGCTTTGCTTCATAAACGACTACTTCAAGCCTCCTCCTAA 1041 0.4207 MVFLCGGKRVKASKGMKATLRYLAGVAGPSGYGSNSTAEQVTEDCSNCFLSSHLTALITGGTSGIGAETARVLAKRGVRVVIGARNLKKAREVRQNIQKETPKAEIIVLEIDLSSFASVQRFCSEFLALQLPLNILINNAGIFSQNLEFSEEKIEMTFATNYLGHFLLTEMLIEKMIETAEKSGIEGRIINVSSVIHSWVKRDAFHFHHLLNGTKYNGTRAYAQSKLANILHAKELARQLKTRNAKVTVNSVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSTSQGAATTCYVAVSAKTQGLSGKYFADCNESNCSSLANDELEAQKLWNNTQALLHKRLLQASS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2525 346 PRINTS Glucose/ribitol dehydrogenase family signature 245 262 IPR002347 -
Alju06g2525 346 PRINTS Glucose/ribitol dehydrogenase family signature 181 197 IPR002347 -
Alju06g2525 346 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Alju06g2525 346 PRINTS Glucose/ribitol dehydrogenase family signature 222 241 IPR002347 -
Alju06g2525 346 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Alju06g2525 346 CDD retinol-DH_like_SDR_c_like 55 330 - -
Alju06g2525 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Alju06g2525 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 222 241 IPR002347 -
Alju06g2525 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 195 IPR002347 -
Alju06g2525 346 PANTHER RETINOL DEHYDROGENASE 29 337 - -
Alju06g2525 346 Pfam short chain dehydrogenase 55 196 IPR002347 -
Alju06g2525 346 Gene3D - 46 341 - -
Alju06g2525 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 55 314 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2525 Alju-ChrAlju06 52257417 52260788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2525 57 261 Acyl Lipid Metabolism Gene Families AT1G63380 30.476 3.14e-14 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2525 06 52257417 52260788 Alju13g1606 13 34320411 34323093 CCT
Alju06g2525 06 52257417 52260788 Alju06g2525 06 52257417 52260788 ECH