Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1916 ATGGGCGGTCGAGGCAAGTCTCGCACTCAACGAAAGCATTTCCGGCAGAGCAGAGAGGATGTGTGGAAGCGTTCAAAACCTGATCCTTCTTCTCAAGATCCTGAATCCACCGACAATCCAAATCCTACTTGGACTCCCTTCGCCACTCAGAACTCTGCTTTTGATGAGTATTACAAAAAGCAGGGCATAGTGCCACCAGAAGATTGGGATGCTTTTGTCGCAGTTCTCAGAACTCCATTGCCTGCTAGCTTCAGAATCAACGCTTGTAGCCAGTTTTCTGCTGATCTTAGGTCGCAATTGGAGAATGATTTTGTGCAAACTCTTCAGGCTGAGGTTGTTGAAGGGGATGATGCAGAGGCCATTAGACCTTTGCCATGGTATCCTGAGAATCTTGCTTGGCATTCCAACTTCTCCCGTATGCAGCTGAGGAAGAATCAGACGCTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTGCCTCCGCTCTTCTTGAACGTTCAGCCAAATCATTTTGTGCTTGATATGTGTGCGGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAACCAAAGCCGGATCTCTTCCTGATGGAATGGTCATAGCAAATGATCTTGATGTTCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGGATGTGCACAGCCAACCTCATTGTCACTAATCATGAAGCTCAAAACTTCCCAGGCTGTCGTTTAGTCAGAAATCATGAACCATTGGAACCAGAACAGCATGTTGGCCAACTTTTATTTGATTGCATTCTCTGTGATGTCCCCTGCAGTGGAGATGGAACCCTTCGCAAGGCACCTGATCTTTGGAGGAAATGGAATACCGGGATAGGCAATGGGCTTCATAGCCTACAAGTTCTAATAGTTATGCGAGGCTTATCGTTACTTAAAGTTGGTGGAAGAATGGTCTATTCAACCTGCTCAATGAATCCAATTGAGAATGAAGCTGTGATTGCAGAGGTTTTACGAAGGTGTGGAGGATCTGTTGAACTTGTTGATGTCTCAAATGAGTGCCCCCAACTTGTGCGCCGGCCAGGTCTCAAGAGATGGAAGGTACGTGACAGGGGCATGTGGTTGTCTTCCTATAAAGATGTTCCCATGTATCGAAGAAGTGCGATTTTTCCCAGCATGTTTCCTTCTGGGAAAAACTATCAGGATCTTGTTGATAGTAATCATAAGATGGAGATGAGAGATGATATTGATAAGGATGTTTGTGGAAACTCTGAAGATGGCAATCAAGCAGCAGAGAATCCTGTGACAGATGAATTAACTGAGGAAGTTTCTGATTTACCGCTAGAGCATTGCATGAGGATTGCGCCTCATGATCAAAACACTGGAGCTTTCTTTATTGCGGTACTGCAAAAAGTTTCTCCTCTTCCAGCAATTCATATTCCTGAAAAAACAAAAAATGGAATTGATAAGCAGCATGGAGAACCTGAGAACAAGGATATTGAGGATTCAAAACTATTGCAGGTTGATTCATTAGAAAATACTCATGAGGAAGCTTTGGAAGTGGATAATGTAATTGATAACAAACCCAACACAGAAGATTTGGAAGCTAGTCCTGGTGCATGTTTAGAAGGGGAAACAGAGGAAGTGCAAAATCCTCCTAAAACAGAAAGCATAGTAAAACCGACTTCAGGGAAAAGAAAGTTGCAGATTCAAGGCAAGTGGAGAGGCGTTGATCCTGTTTTCTTTTTCAAAGATGAAGACACTATTAACAGCATAAAGAATTTTTATGGTATCAATGGAGGGTTTCCATTCAATGGTCGTCTTGTCACTAGAAACAATGATGGAGGCCACGTGAAAAGAATTTACTATGTCAGCAAGTCAGTCAAAGACGTTCTTGAACTGAATTTCTCAGTTGGGCAGCAACTCAAAATAGCATCCCTTGGTCTGAAGATGTTTGAAAGACAGACAACAAGAGAAGGAATCTCAACACCATGTGCTTTCCGAATATCATCTGAAGGATTGCCTCTTATTTTGCCATACATTACCAAGAGGATTCTTTGTGCATCTCCTGTAGACTTCAAGCATCTTCTGCAGTACAAAACAATAAAATTTGCAGATTTTGTTGATGCTGACTTTGGCAAAAGGGCCGAAAAACTAACGCCAGGCTATTGTGTGGTAGTTCTAAGTAAAAGGAAAAGAGAAGCACCAGAATCCATTCAGGTGGACGAGTCTACCATAGCCATTGGATGCTGGAAAGGAAGGGCCAGTTTGAATGTGATGGTAACTGCAATGGACTGCCGAGAACTGCTTGAAAGACTTCTAGTGCGCTTTGATACAGAAAATGGTTCCTCCATGCATGAGAATATGCCTTCCAATAATGCCATTGATGAAGTACAGAGCACTAACGGTATTGGTGACTCGGAAGCTCCTGGAGGCGACAATAGCTAA 2484 0.4267 MGGRGKSRTQRKHFRQSREDVWKRSKPDPSSQDPESTDNPNPTWTPFATQNSAFDEYYKKQGIVPPEDWDAFVAVLRTPLPASFRINACSQFSADLRSQLENDFVQTLQAEVVEGDDAEAIRPLPWYPENLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLNVQPNHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLVRNHEPLEPEQHVGQLLFDCILCDVPCSGDGTLRKAPDLWRKWNTGIGNGLHSLQVLIVMRGLSLLKVGGRMVYSTCSMNPIENEAVIAEVLRRCGGSVELVDVSNECPQLVRRPGLKRWKVRDRGMWLSSYKDVPMYRRSAIFPSMFPSGKNYQDLVDSNHKMEMRDDIDKDVCGNSEDGNQAAENPVTDELTEEVSDLPLEHCMRIAPHDQNTGAFFIAVLQKVSPLPAIHIPEKTKNGIDKQHGEPENKDIEDSKLLQVDSLENTHEEALEVDNVIDNKPNTEDLEASPGACLEGETEEVQNPPKTESIVKPTSGKRKLQIQGKWRGVDPVFFFKDEDTINSIKNFYGINGGFPFNGRLVTRNNDGGHVKRIYYVSKSVKDVLELNFSVGQQLKIASLGLKMFERQTTREGISTPCAFRISSEGLPLILPYITKRILCASPVDFKHLLQYKTIKFADFVDADFGKRAEKLTPGYCVVVLSKRKREAPESIQVDESTIAIGCWKGRASLNVMVTAMDCRELLERLLVRFDTENGSSMHENMPSNNAIDEVQSTNGIGDSEAPGGDNS 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1916 827 Gene3D Vaccinia Virus protein VP39 48 394 IPR029063 -
Alju06g1916 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 361 380 IPR023270 GO:0016428
Alju06g1916 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 133 154 IPR023270 GO:0016428
Alju06g1916 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 654 666 IPR023270 GO:0016428
Alju06g1916 827 MobiDBLite consensus disorder prediction 1 46 - -
Alju06g1916 827 MobiDBLite consensus disorder prediction 13 31 - -
Alju06g1916 827 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 801 IPR023267 GO:0001510
Alju06g1916 827 MobiDBLite consensus disorder prediction 796 821 - -
Alju06g1916 827 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 72 484 IPR001678 GO:0008168
Alju06g1916 827 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 484 IPR029063 -
Alju06g1916 827 PRINTS RNA (C5-cytosine) methyltransferase signature 187 197 IPR023267 GO:0001510
Alju06g1916 827 PRINTS RNA (C5-cytosine) methyltransferase signature 327 343 IPR023267 GO:0001510
Alju06g1916 827 PRINTS RNA (C5-cytosine) methyltransferase signature 466 483 IPR023267 GO:0001510
Alju06g1916 827 PRINTS RNA (C5-cytosine) methyltransferase signature 277 289 IPR023267 GO:0001510
Alju06g1916 827 MobiDBLite consensus disorder prediction 554 575 - -
Alju06g1916 827 MobiDBLite consensus disorder prediction 796 827 - -
Alju06g1916 827 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 49 391 - -
Alju06g1916 827 MobiDBLite consensus disorder prediction 32 46 - -
Alju06g1916 827 Pfam 16S rRNA methyltransferase RsmB/F 177 361 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1916 Alju-ChrAlju06 43497510 43511890 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1916 06 43497510 43511890 Alju06g1916 06 43497510 43511890 CCT
Alju06g1916 06 43497510 43511890 Alju06g1916 06 43497510 43511890 ECH