Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1881 ATGGCTGAAACCGGTATCGTCCGGTTTCCGGGGAGCTTAGACCCTCGAGCGGAAGAGTTCACGCCGAGAAATCAAACAACGCTATACCGGCCAGCTCAACTGTTCTACCCTTGCGTGCCCACCGCCGGCGTTCAGCTTCAGCCGCTGCCTTTTTGTAATGCTGCTGCTCCAGTCGGTGTTCCGTATCCGTCGTTCTGCTCCCCCGCGGCGTACGTTGGCCAACTACCTTCGCCGGCCACGCCGTCGGCGTCTCCGTCTCCGTCGCTGTTTTCGTCGTCCTCGCCCACGCGGTCGCTGCTGCTCAGCTCAGTGCCGGCGGAGGTGGTGGTGAGTGAGTCGTTGTTGCGGCGGGAATTGGAGGTGTTCGGAGATGTTAGAGGCGTGCAGATGGAGAGGGTTCGCGAAGGAATAGTGACTGTTCATTTCTACGACCTGAGACATGCAGAGACCGCGTTAATGGCGATTCGGAAGCAGCACATGCAACACCAGACCAGGCTCCGTAATTTCTATTCCTCAGTGTTGAAGTCTCGCAATTCGGCGTTGGAGCCGGACGGTTACTCCGTCACCGCCCCACTCCCACCGCCGGCGCGTGGGCTCGTGGCCGGTCGTCCAGTGTGGGCCCAGTACATTGCCCCAGCTCCCAACGCCGTCCCCAAGGGCCAGAACCAAGGCACCATCGTGATTTTCAATTTAGAGTCGACGGTGTCCATAGAAACTCTCCGGCGAACTTTCGAGGCATTTGGTCCTGTGAGGGAACTAAGAGAGACGCCATCAAAGAAGAATCAGAAGTTTGTGGAGTTCTTTGACGTCAGAGATGCTGCCAAGGCCTTGGAGGACATGAACGGCAAGGAAATTAACGGCAAAGCCGTCGTTATTGAGTTCAGTCGTCCCGGTGGTGGTCATGGCCGGAAGTTCTTCAACCACCACCAGACAATCTCCAAAAACGCAGTGCCGATGAACTACCAACCCCCTCCCCCTCCCCCTCCTCCCCATCCACCTTCTCCTTCTCCACCACTGGCCCACAAAAACGCACGTCGTTTTTCTCATCTTCCCCAGCCCCAATTGTCGTGCAGGAAAACAGCTGGCAACAAGGGTAGGAACGGTGGTGAAGACACAGTTTCTTTGGAAACGACGAATTTGAGTGGGGTTGAAGAGAAGCCACCGGAAGTGCCTGCACCGAGAAACGCCGCCGTGAAGAACTGTGTGGGTGAGGCGGCTGCAACGTCGGCGGCGGGAAGCACGAAGCAACAGCAGCAACAACAACAACCCAGAAGTAGGAATTGGAAGGGGAAGCAAGGGAGGAAGCTGGAAACAAGGTTTCTGATTAAGGAAGATGCGATTGTGGAATCGAGTAACAAAGATTCCAGAACTACTGTCATGATCAAGAACATACCAAACAAGTACAGTCAGAAGCTACTATTGAACATGCTGGACAATCACTGCATCCACTGCAACGAGCAGATTGGCGACGGCGACTACCAACCCTTGTCCTCTTACGATTTCGTCTACCTCCCCATTGATTTCAACAACAAGTGTAACGTGGGGTATGGGTTTGTGAACATGACATCACCGGAGGCGACGATGAGGTTGTATAAAGCATTTCATCTTCAACATTGGGAAGTCTTTAACTCGAGAAAAATATGCCAGGTCACATACGCCAGGGTTCAGAAGGGTTTGGAAGCGTTGAAAGAGCATTTCAAGAACTCCAAGTTCCCATGCGAGATAGAGCATTACTTACCGGTGGTGTTTTCTCCGCCGCGAGATGGGAGGCAGCTGACGGAGCCACTTCCGATCGTGGGTCAGAAGCAGCCTGGAGAAATCACGGATGGGGCCACCGACTGTAAAACAATTAATGACGATGATGTCGGTGGTGAGGTGGAGGATAAGAATAGCACAGCAGCAGCAGGGAGCAGCGGCGGCGGCGGACAACAGAAGCAGGACATGCAGAGCAGCAGAGAAAACGGCAGCGGGGAGGGTGATGATGATGGTGACGACGATGACAGTAGCAGAAGAAATAGCGAAGGGGTAGAAGAAATGGGAAGGGATTAA 2049 0.5417 MAETGIVRFPGSLDPRAEEFTPRNQTTLYRPAQLFYPCVPTAGVQLQPLPFCNAAAPVGVPYPSFCSPAAYVGQLPSPATPSASPSPSLFSSSSPTRSLLLSSVPAEVVVSESLLRRELEVFGDVRGVQMERVREGIVTVHFYDLRHAETALMAIRKQHMQHQTRLRNFYSSVLKSRNSALEPDGYSVTAPLPPPARGLVAGRPVWAQYIAPAPNAVPKGQNQGTIVIFNLESTVSIETLRRTFEAFGPVRELRETPSKKNQKFVEFFDVRDAAKALEDMNGKEINGKAVVIEFSRPGGGHGRKFFNHHQTISKNAVPMNYQPPPPPPPPHPPSPSPPLAHKNARRFSHLPQPQLSCRKTAGNKGRNGGEDTVSLETTNLSGVEEKPPEVPAPRNAAVKNCVGEAAATSAAGSTKQQQQQQQPRSRNWKGKQGRKLETRFLIKEDAIVESSNKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDYQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATMRLYKAFHLQHWEVFNSRKICQVTYARVQKGLEALKEHFKNSKFPCEIEHYLPVVFSPPRDGRQLTEPLPIVGQKQPGEITDGATDCKTINDDDVGGEVEDKNSTAAAGSSGGGGQQKQDMQSSRENGSGEGDDDGDDDDSSRRNSEGVEEMGRD 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1881 682 Gene3D - 404 564 IPR012677 -
Alju06g1881 682 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 290 IPR000504 GO:0003723
Alju06g1881 682 PANTHER RNA RECOGNITION MOTIF-CONTAINING 452 585 - -
Alju06g1881 682 MobiDBLite consensus disorder prediction 316 394 - -
Alju06g1881 682 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 297 IPR000504 GO:0003723
Alju06g1881 682 MobiDBLite consensus disorder prediction 590 682 - -
Alju06g1881 682 MobiDBLite consensus disorder prediction 666 682 - -
Alju06g1881 682 CDD RRM3_EAR1_like 456 556 IPR034458 -
Alju06g1881 682 MobiDBLite consensus disorder prediction 319 339 - -
Alju06g1881 682 SUPERFAMILY RNA-binding domain, RBD 77 161 IPR035979 GO:0003676
Alju06g1881 682 SUPERFAMILY RNA-binding domain, RBD 224 534 IPR035979 GO:0003676
Alju06g1881 682 MobiDBLite consensus disorder prediction 407 427 - -
Alju06g1881 682 MobiDBLite consensus disorder prediction 631 653 - -
Alju06g1881 682 Gene3D - 213 296 IPR012677 -
Alju06g1881 682 MobiDBLite consensus disorder prediction 613 627 - -
Alju06g1881 682 MobiDBLite consensus disorder prediction 407 434 - -
Alju06g1881 682 FunFam Terminal EAR1-like 1 404 563 - -
Alju06g1881 682 Pfam RNA recognition motif 2 456 567 IPR007201 -
Alju06g1881 682 SMART rrm1_1 225 293 IPR000504 GO:0003723
Alju06g1881 682 SMART rrm1_1 98 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1881 Alju-ChrAlju06 42180691 42183565 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1881 06 42180691 42183565 Alju06g1881 06 42180691 42183565 ECH