Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0115 ATGCCCGGAAACCGTTACTACGGTGGCAACGAGTACATCGACGAGATCGAGAATCTCTGCAGGTCTCGTGCTCTTCAGGCCTTCCACGTCGATCCCGCAAAGTGGGGTGTCAATGTTCAGCCCTACTCTGGTTCTCCGGCCAATTTCGCCGCCTACACGGCCGTTCTTCAGCCCCACGACCGCATCATGGGCTTGGATCTACCCTCTGGTGGTCACTTGACGCATGGGTACTACACTGCCGGAGGGAAGAAGATCTCTGCAACCTCAATTTATTTCGAGAGCTTGCCTTACAAGGTGAATTCCAGCTCTGGATACATTGACTACGACAAGCTCGAGGAGAAGGCCCTGGACTTCCGCCCCAAGTTGATCATTTGCGGTGGAAGTGCATACCCCCGCGACTGGGAATATGCGAGGTTTAGGGAGATTGCCGATAAGTGTGGTGCACTCTTGCTCTGTGATATGGCCCACATCAGCGGTCTTGTTGCTGCCCAGGAAGCTAATAACCCTTTTGAGTACTGTGACTTGGTCACGACAACAACCCACAAGAGCTTGAGAGGTCCTAGGGCAGGTATGATCTTCTACAGGAAAGGACCAAAACCACCCAAGAAAGGCCAGCCCGAGGGCGCAGTTTATGACTTTGAAGACAAGATCAATTTTGCTGTCTTCCCCTCCCTTCAGGGTGGTCCTCACAATCACCAGATTGGTGCTCTTGCTGTTGCCCTGAAACAAGCCATGTCGCCTGGGTTCAAGGCCTATGCCAAACAAGTTAAGGCCAATGCAGTTGCTCTTGGAAATTTCTTGATGAGCAAGGGATACAAGCTTGTCACTGGAGGAACTGAGAATCATCTTGTCTTGTGGGATCTCAGGCCTCTGGGTTTGACTGGCAACAAGGTGGAGAAACTTTGTGACCTCTGTAACATTACCGTGAACAAAAATGCTGTTTTTGGCGACAGTAGTGCTTTGGCTCCAGGAGGAGTACGCATTGGTGCCCCGGCCATGACCTCAAGAGGGTTGGTTGAGAAGGACTTTGAACAGATTGGAGAGTTCCTTCACCGTGCAGTGACTCTGACACTTAAGATCCAGAACGAGCATGGCAAGCTTTTGAAGGACTTCAACAAGGGCTTGATAGACAACAAGGAAATTGAAGCCCTCAAGGCTGATGTGGAGAAGTTTGCAGCCGCATTTGACATGCCCGGCTTCCTAGTTTCTGAGATGAAGTACAAGGATTAG 1230 0.5089 MPGNRYYGGNEYIDEIENLCRSRALQAFHVDPAKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVNSSSGYIDYDKLEEKALDFRPKLIICGGSAYPRDWEYARFREIADKCGALLLCDMAHISGLVAAQEANNPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKAYAKQVKANAVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLKIQNEHGKLLKDFNKGLIDNKEIEALKADVEKFAAAFDMPGFLVSEMKYKD 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0115 409 FunFam Serine hydroxymethyltransferase 1 197 - -
Alju06g0115 409 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 174 190 IPR019798 GO:0030170
Alju06g0115 409 Pfam Serine hydroxymethyltransferase 2 349 IPR039429 -
Alju06g0115 409 PIRSF SHMT 1 404 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Alju06g0115 409 FunFam Serine hydroxymethyltransferase 242 398 - -
Alju06g0115 409 Gene3D Aspartate Aminotransferase, domain 1 255 398 IPR015422 GO:0003824
Alju06g0115 409 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 401 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Alju06g0115 409 Gene3D - 1 254 IPR015421 GO:0003824
Alju06g0115 409 SUPERFAMILY PLP-dependent transferases 1 401 IPR015424 -
Alju06g0115 409 CDD SHMT 2 391 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0115 Alju-ChrAlju06 927807 930163 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g0115 06 927807 930163 Alju06g0115 06 927807 930163 ECH