Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1545 ATGCTATGGGCAATTAAAGTGAGGATCAATATGAGCAGGCCTGGAGATTGGACTTGCAGGTCATGCCAGCATCTGAACTTTCAGAGAAGGGACATGTGTCAGAGATGTGGGGAATCAAAGTATGGAGATTTAGGGTTTGGAGGAGGAAGAATGGCGATGATGGGATCTTCATTTGGGTTTAGCAGTAGTGGTAATATTGGTACCACTGGTTCTGATGTTCGTCCAGGTGACTGGTACTGTAGTGCTGCAAACTGTGGAGCCCATAACTTTGCCAGCAGATCAAGCTGCTTCAAGTGTGGTGCTTTCAAAGATGACTTTGCTTCTTCCTTCTCCTGCTCTCGACCTTCTGCCTCTTCTAGACCTTCTTGGAAATCTGGTGACTGGATTTGCAACAGGTCAGGGTGCAACGAGCACAACTTTGCTAGCAGAATGGAATGCTTTAAATGCAGTGCGCCGAGGGATACGTACTAG 471 0.4713 MLWAIKVRINMSRPGDWTCRSCQHLNFQRRDMCQRCGESKYGDLGFGGGRMAMMGSSFGFSSSGNIGTTGSDVRPGDWYCSAANCGAHNFASRSSCFKCGAFKDDFASSFSCSRPSASSRPSWKSGDWICNRSGCNEHNFASRMECFKCSAPRDTY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1545 156 SUPERFAMILY Ran binding protein zinc finger-like 118 154 IPR036443 -
Alju05g1545 156 ProSiteProfiles Zinc finger RanBP2 type profile. 13 42 IPR001876 -
Alju05g1545 156 SUPERFAMILY Ran binding protein zinc finger-like 11 43 IPR036443 -
Alju05g1545 156 SUPERFAMILY Ran binding protein zinc finger-like 65 105 IPR036443 -
Alju05g1545 156 FunFam Ran-binding zinc finger protein 68 105 - -
Alju05g1545 156 Pfam Zn-finger in Ran binding protein and others 124 153 IPR001876 -
Alju05g1545 156 Pfam Zn-finger in Ran binding protein and others 74 101 IPR001876 -
Alju05g1545 156 Pfam Zn-finger in Ran binding protein and others 13 40 IPR001876 -
Alju05g1545 156 ProSitePatterns Zinc finger RanBP2-type signature. 17 36 IPR001876 -
Alju05g1545 156 PANTHER ZINC FINGER PROTEIN 71 154 - -
Alju05g1545 156 FunFam Ran-binding zinc finger protein 116 155 - -
Alju05g1545 156 Gene3D - 116 155 - -
Alju05g1545 156 Gene3D - 8 42 - -
Alju05g1545 156 Gene3D - 66 105 - -
Alju05g1545 156 ProSiteProfiles Zinc finger RanBP2 type profile. 74 105 IPR001876 -
Alju05g1545 156 ProSiteProfiles Zinc finger RanBP2 type profile. 124 155 IPR001876 -
Alju05g1545 156 ProSitePatterns Zinc finger RanBP2-type signature. 128 149 IPR001876 -
Alju05g1545 156 SMART zf_4 126 152 IPR001876 -
Alju05g1545 156 SMART zf_4 76 102 IPR001876 -
Alju05g1545 156 SMART zf_4 15 39 IPR001876 -
Alju05g1545 156 ProSitePatterns Zinc finger RanBP2-type signature. 78 99 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1545 Alju-ChrAlju05 45710379 45712606 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1545 05 45710379 45712606 Alju05g1545 05 45710379 45712606 ECH