Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1488 ATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAGTTTCTGGAAGAGGAGAAGTTCAAAGAGACTGTTCACAAGCTTGAACAAGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTGGAAAGATATCTCTCTGGTTTTACAAAAGTTGATGATAATCGGTACTCAATGAAGATATTTTTTGAGATCAGGAAGCAGAAATACCTTGAAGCATTAGATAAGCATGACAGGTCCAAGGCTGTAGAAATATTAGTGAAGGACTTAAAAGTTTTTTCCACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACATTGGAGAATTTCAGGGAAAATGAACAATTGTCAAAGTATGGCGACACAAAGTCTGCAAGGGCAATCATGTTGATTGAGCTTAAAAAGCTGATTGAAGCAAATCCCTTATTCCGTGACAAATTGCAGTTTCCCAACCTTAAAAACTCTAGACTACGAACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAGCTCTGTAAGAATCCACGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCATGTGGACAGCCAAATGGCGCACGCGCTCCATCGCCAGCTAATAGTCCGCTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCTCTAGGAGCCCATGGGCCATTTCAACCTACCACAGCACCCATGCCGACACCCCTGGCAGGATGGATGTCAAATCCTACCACTGTAGCTCATCCTGCAGTTTCTGGAGGAGGGGCTATAGGTCTCGGCGCTCCTTCAATCTCTGCTGCTCTGAAGCACCCTAGGACCCCTCCAACTAACCCATCTGTTGACTACCCATCTGGAGATTCTGACCACGTATCTAAGAGACCAAGGCCAATGGGAATGCCAGATGAGGTGAATCTACCAGTTAATATGTTGCAAGCTGCATTACCAGGTCATGGGCATGGCCAATCTTTTAATGCCCCTGATGACTTACCAAAGACTGTTACACGAACTCTGAACCAGGGTTCATCTCCAATGAGCATGGACTTTCATCCAGTTCAACAGAGTTTACTCCTTGTTGGCACCAGTGTGGGAGACATTTCTTTGTGGGAAGTGGGCTCTCGTGAGAGATTGGTCTCAAAGAACTTTAAAGTTTGGGATCTGAGTGCCTGTTCCATTTCAACTCAGGCTGCTCTGGTCAAAGATCCCATGGTTTCCGTCAATCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCGACGCATATTGTTCAGATATGCTCATACCATGGTGGGGATGATGTGCGCCAACACCTGGAGATTGATGCTCATGTTGGTGGAGTGAATGATCTTGCATTTTCCCACCCAAATAAGCAATTGTGTGTCATAACTTGTGGTGATGACAAGACGATTAAGGTTTGGGATGCTGCTACTGGTACAAAACAGTTTACTTTTGAAGGTCACGAGGCTCCAGTCTATTCTGTTTGCCCTCATTACAAAGAAAACATTCAGTTTATATTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTATATGACAATTTGGGTTCTCGTGTTGATTATGATGCTCCTGGCCGTTGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCAATTGTTGAATGGAATGAAAGTGAAGGAGCTGTCAAAAGGACATATCAAGGATTTCGTAAAAGATCATTGGGTGTTGTGCAATTTGATACAATCAAAAATAAATTTTTGGCTGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAACGTTCAACTTTTGACAACTATCGATGCAGATGGAGGACTACCTGCAAGCCCACGTATCCGTTTCAACAAGGATGGAACCCTCTTAGCTGTTTCTGCAAATGAGAATGGAATTAAGATTTTAGCCAATGCAGATGGAATAAGATTTTTACGAACATTAGAGAATTCTGCATACGAGGCATCAAGAACATCTGAAGCCATAAAGCCCACATTAAATCCAATTTCAGCTGCTGCTGCTGCTGCAAGTAGTGCTGCACTTGGAGAGAGGGGCTCATCCGTAGTAGCTATTGCAGGAATGAATGGGGATGCTAGGAACTTGGGTGATGTTAAACCTAGAATAGCCGAAGAATCCAATGACAACTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTGCCTGAGAATCTGAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCAATACTGGCATTATCATCAGATGCAATTCATCTGCTCTGGAAATGGCAGCGAAGTGACCGAAATTCTTCAGGCAAGGCTACTGCCAGTGTCTCACCACACTTGTGGCAACCATCAAGTGGCATCCGGATGACTAATGACATTTCTGACAGCAATCCTGAGGATGCTGTACCTTGCTTTGCTCTCTCCAAAAATGATTCTTATGTGATGTCAGCATCAGGAGGGAAGATTTCGCTGTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCACCCGCAGCAACCGTTCTTGCTTTCCACCCTCAGGATAACAATGTTATAGCTATTGGGATGGATGATTCCACCATTCAGATATACAATGTCCGGGTGGATGAGGTTAAAAGTAAACTGAAAGGTCACACCAAAAGAATAACCGGCCTTGCTTTTTCTCATGCACTGAATGTGTTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAGGAGCAAATTCTTGCAGATTCCTGCTGGGAGGACTCCATCGGCACAGGCAGAAACCCGAGTACAGTTTCACCAGGATCAGATGCACTTCTTGGTTGTACATGAAACTCAGCTTGCCATATATGAAACAACAAAACTAGAATGTCTAAAGCAGTGGTTTCCAAGAGATTCTACTGCGCCTATATCAGCGGCAACTTTCTCATGTGATAGCCAGCTGATATATGCCAGCTTTTTAGATGCAACAGTTTATGTCTTCAGTGCATCAAACCTCAGATTATGTTGTCGTATCAATCCTTCTTCTTATCTTTCTGCCGGTGTCAGTTCGAAAGTACAACCACTTGTGGTTGCGGCACATCCACAAGAACCAAATCAGTTTGCTTTGGGATTGTCAGACGGCGGAGTTCATGTGTTTGAACCCCTCGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTCCTATTGAGAATGGATCAGCAAGTAATGTGGTAGCTACTTCAGCAGGAGTTTCTTCAGATCAAGCCCAGAGATAG 3399 0.434 MSSLSRELVFLILQFLEEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPTTAPMPTPLAGWMSNPTTVAHPAVSGGGAIGLGAPSISAALKHPRTPPTNPSVDYPSGDSDHVSKRPRPMGMPDEVNLPVNMLQAALPGHGHGQSFNAPDDLPKTVTRTLNQGSSPMSMDFHPVQQSLLLVGTSVGDISLWEVGSRERLVSKNFKVWDLSACSISTQAALVKDPMVSVNRVIWSPDGALFGVAYSTHIVQICSYHGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGTKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTIKNKFLAAGDDFSIKFWDMDNVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRFLRTLENSAYEASRTSEAIKPTLNPISAAAAAASSAALGERGSSVVAIAGMNGDARNLGDVKPRIAEESNDNSKIWKLTEINEPSQCRSLKLPENLRVTKISRLIYTNSGNAILALSSDAIHLLWKWQRSDRNSSGKATASVSPHLWQPSSGIRMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATVLAFHPQDNNVIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNTDGWEKQRSKFLQIPAGRTPSAQAETRVQFHQDQMHFLVVHETQLAIYETTKLECLKQWFPRDSTAPISAATFSCDSQLIYASFLDATVYVFSASNLRLCCRINPSSYLSAGVSSKVQPLVVAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVVATSAGVSSDQAQR 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1488 1132 Gene3D - 970 1114 IPR015943 GO:0005515
Alju05g1488 1132 Gene3D - 738 965 IPR015943 GO:0005515
Alju05g1488 1132 SMART WD40_4 829 866 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 538 581 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 869 909 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 405 444 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 912 951 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 494 535 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 584 624 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 1003 1044 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 450 491 IPR001680 GO:0005515
Alju05g1488 1132 SMART WD40_4 344 383 IPR001680 GO:0005515
Alju05g1488 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 919 951 - -
Alju05g1488 1132 MobiDBLite consensus disorder prediction 1114 1132 - -
Alju05g1488 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Alju05g1488 1132 Gene3D - 548 688 IPR015943 GO:0005515
Alju05g1488 1132 SUPERFAMILY WD40 repeat-like 344 666 IPR036322 GO:0005515
Alju05g1488 1132 Pfam WD domain, G-beta repeat 918 951 IPR001680 GO:0005515
Alju05g1488 1132 Pfam WD domain, G-beta repeat 457 491 IPR001680 GO:0005515
Alju05g1488 1132 SMART ctlh 34 92 IPR006595 -
Alju05g1488 1132 FunFam Topless-related protein 1 324 542 - -
Alju05g1488 1132 SMART Lish 4 36 IPR006594 GO:0005515
Alju05g1488 1132 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Alju05g1488 1132 Gene3D - 332 547 IPR015943 GO:0005515
Alju05g1488 1132 SUPERFAMILY WD40 repeat-like 837 1097 IPR036322 GO:0005515
Alju05g1488 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
Alju05g1488 1132 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Alju05g1488 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 919 960 IPR001680 GO:0005515
Alju05g1488 1132 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1114 IPR027728 GO:0006355
Alju05g1488 1132 MobiDBLite consensus disorder prediction 283 309 - -
Alju05g1488 1132 FunFam Topless-related protein 3 738 972 - -
Alju05g1488 1132 MobiDBLite consensus disorder prediction 1103 1132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1488 Alju-ChrAlju05 44983971 44991399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1488 455 668 Miscellaneous Gene Families AT5G08390 24.312 1.22e-06 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1488 05 44983971 44991399 Alju05g1488 05 44983971 44991399 ECH