Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1301 ATGAGAATGGCGGAAGGAAGCCAAACTAGTAAATGGCTTTCCTCAAAGGATATTTCAGCATTTGGATCTTTCTGGAAAAATAAGTCAACAGAGGAGCTGGATACTTTCTTGAAGGGACAAAAGTTCAGTCAAGAACAAGCAAACAGTATTCCAAGTCGAAGTGGTAGTGCTCCACCAAGTATGGAGGGCTCAGTTGCAGCAGTTGGAAATATGTTACCTGTGAAGGATTCTAGTCTGGTTTCAAATTCAGGAAGTTTGAGCAATGCTCTTGTGGATCACAAGTCTGAAGGAGAGCTATTTGATCCTTCTAATGTTGATTTCCATTCCTTGGAGCTCAACTTGGATCCCAAGCTTCTTTCACAGCCCTTGCAAAATCAATTTAGCAATCATGAAAAAAATCAAGACATCAATGGTTCGCCAAAGCAAGCTTCAGAAAGCTTGTTCAATCCCAGTAACATGCCTAAACCTGGGAAAAATGCAGTCCCATCAGCTAGTGTTCATAAAAGCTTGGTGGATTTGATACAGGAAGACTTCCCCCGTACCCCTTCCCCTGTATTTAACCAATCTCATTTATCAAGTAATGCTACAACTGAAGATTCAGTTGATGTTGATGGTGTTTCATCAATAGATTTATCAAACCAGTCCGACTCAGCTACATGTACTACTGGTGTTGTGAAGACAGGCATCCTGAACACCGATACTCATGAACTAACATCAAATGAAGTTTCTCTGTTAAACTTCCAAAGTTCCCAGCATGCTGATGAAACCCAAAACCTGCCAGTGGATCCAAGTCCAACATGCAACAAAGATGCTGTGCTGAAGGATTATGTATCAACTGATGGGGCTGTAAATGTGGAAGAGCATAAATTAACAGCCTCTGATGTTAGAAGAAAAAAACTAGAATCACAACAATCTCATGGTAGGAATAAGCTAAATCAATCTTTTACTTGTGGCTATGCCCATCAATTTCCAGTTGTGGGGTCACAATTTCCTCAAGGCATAAACAATTCACAAAGTTACTTGGGAATGCTTGGTTATAGTAATTCACAATTTTCACCTCTTGGTATACAATCATCATTGCCTTCTAGTGGACTTGCTGCTCCTTACTATGCAGCTCCAACTGCATTTATGACTTCAGGAAACCCATTTTATCCTAATTTTCAGCCATCAGGCTTTCTCTCTCCACAGTATAGTTTAGGTGGGTATGGTTTAGATTCTACCTCTGTGGCACCTTATATAGCTGGATATTCTTCTCAAGGTGACCTTCCTTTTCCATCTGAAGCTGCAGGAAGCCCTGACCTAAATGGTCAAGCTACCAATGCTTCTTCAGGAGGTGTTACACTTGCTTCTGATTTTCGAAGTCGCAGCAAGATTTATCGGCAATATGGATTACCAGTACAACCTTCATATGTTAATCCAATCAATATGCAATATTATTCCCACGGTTCCAGTGATGTGTATCCTGCTGCTTTTCAGCAGAATCACTTGTCATCAAGAACACTGACTGGAGGACTGGCTTGTCCTCTACTGTCCCAGCAAGATGCAGCTGTTCCTTCCTATTTAAATGATCATAAATTTCGATCTTCAGCACATGATAGCTTTCCCATTCCAAGTACAAAAAATATGGAGATCTCTGGAAGTAGCTATTATGGGAACTCCAATAGGGGTGTCAGGATGCAATGTCCTCCTTTGTCTCGTGGTGGTCCAATTCGTCCATCCTCTCAAGATGGACAAAATGAGAATATGCCTTGTGTTTCTGTCAGAAATGCAGGATTTTCACCTGGACAGAGAGGAAGTAGGGGTTTTGGTGAAACCAAGCAGCACTCTTTTCTAGAGGAACTTAAATCCATCAATCCTGAGAAGTTCAAGCTCTCTGATATAGCAGGGCGTATTATTGAATTCAGCATTGACCAACATGGAAGTCGATTTATCCAGCAGAAGCTTGAAAACTGCAGTGCTGAAGAGAAGGCATCTGTTTTTGAAGAAATCCTTCCATATACCTCAAAATTAATGACAGATGTGTTTGGCAATTATGTAATTCAGAAGTTTTTTGATCATGGAAGCGCTGATCAGAGAAAAACCCTTGTAGATAAACTTTCTGGACGGATTTTATCATTAGGTTTGCAGATGTATGGCTGTCGTGTTATCCAAAAGGCCCTTGATGTTATTGAATTAGATCAGAAGACACTGTTAATGCAAGAGCTTGAAGGACATGTCATGAGATGTGTACACGATCAAAATGGGAATCATGTCATACAAAAATGTATAGAATGCATTCCTGTGTACAGAATAAACTTTATCATATCTGCATTTCGAGGACAAGTTCAGGCTCTTTCTACTCACCCATATGGGTGTCGTGTTATTCAGAGAATTTTGGAGCATTGTTCAGATGAGCAATCTATTCAATTTATAGTGGACGAAATTCTGGAATCTGCTTTTGTCCTTGCTCAAGATCAGTATGGCAATTATGTGACTCAGTACGTCCTGAAAAGGGGGGAAAATGAAAGAGGTCAAATTGTAAGCAAGTTAGCTGGCAAGATTGTACAATTGAGTCAGCATAAGTATGCTTCTAATGTTGTTGAGAAGTGTTTAGAGCATGGTGATGCGACTGAACGAGAGGCCTTGATTTCAGAAATAATTGGGCAGCCTGGTGAAGGCCATAACTTATTGACGATGATGAAGGACCAGTACGCAAATTATGTGATCCAGAAACTTCTTGATATAAGCAATGACAGCTATCGGCAGATACTTCTCAATCAGATAAGAGATCATATAGATGCTTTGAAGAAATACACGTATGGCAAACACATTGTTGCTCGTTATGAACAACTTGTTGGTCCAGCTAGCGAGGATTAG 2856 0.4037 MRMAEGSQTSKWLSSKDISAFGSFWKNKSTEELDTFLKGQKFSQEQANSIPSRSGSAPPSMEGSVAAVGNMLPVKDSSLVSNSGSLSNALVDHKSEGELFDPSNVDFHSLELNLDPKLLSQPLQNQFSNHEKNQDINGSPKQASESLFNPSNMPKPGKNAVPSASVHKSLVDLIQEDFPRTPSPVFNQSHLSSNATTEDSVDVDGVSSIDLSNQSDSATCTTGVVKTGILNTDTHELTSNEVSLLNFQSSQHADETQNLPVDPSPTCNKDAVLKDYVSTDGAVNVEEHKLTASDVRRKKLESQQSHGRNKLNQSFTCGYAHQFPVVGSQFPQGINNSQSYLGMLGYSNSQFSPLGIQSSLPSSGLAAPYYAAPTAFMTSGNPFYPNFQPSGFLSPQYSLGGYGLDSTSVAPYIAGYSSQGDLPFPSEAAGSPDLNGQATNASSGGVTLASDFRSRSKIYRQYGLPVQPSYVNPINMQYYSHGSSDVYPAAFQQNHLSSRTLTGGLACPLLSQQDAAVPSYLNDHKFRSSAHDSFPIPSTKNMEISGSSYYGNSNRGVRMQCPPLSRGGPIRPSSQDGQNENMPCVSVRNAGFSPGQRGSRGFGETKQHSFLEELKSINPEKFKLSDIAGRIIEFSIDQHGSRFIQQKLENCSAEEKASVFEEILPYTSKLMTDVFGNYVIQKFFDHGSADQRKTLVDKLSGRILSLGLQMYGCRVIQKALDVIELDQKTLLMQELEGHVMRCVHDQNGNHVIQKCIECIPVYRINFIISAFRGQVQALSTHPYGCRVIQRILEHCSDEQSIQFIVDEILESAFVLAQDQYGNYVTQYVLKRGENERGQIVSKLAGKIVQLSQHKYASNVVEKCLEHGDATEREALISEIIGQPGEGHNLLTMMKDQYANYVIQKLLDISNDSYRQILLNQIRDHIDALKKYTYGKHIVARYEQLVGPASED 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1301 951 ProSiteProfiles Pumilio RNA-binding repeat profile. 662 697 IPR001313 GO:0003723
Alju05g1301 951 ProSiteProfiles Pumilio RNA-binding repeat profile. 878 919 IPR001313 GO:0003723
Alju05g1301 951 MobiDBLite consensus disorder prediction 129 162 - -
Alju05g1301 951 ProSiteProfiles Pumilio RNA-binding repeat profile. 842 877 IPR001313 GO:0003723
Alju05g1301 951 Gene3D - 605 947 IPR011989 -
Alju05g1301 951 MobiDBLite consensus disorder prediction 39 59 - -
Alju05g1301 951 CDD Pumilio 621 940 IPR033712 GO:0003723
Alju05g1301 951 ProSiteProfiles Pumilio RNA-binding repeat profile. 698 733 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 815 842 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 847 880 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 630 664 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 745 760 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 669 699 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 774 809 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 702 735 IPR001313 GO:0003723
Alju05g1301 951 Pfam Pumilio-family RNA binding repeat 888 921 IPR001313 GO:0003723
Alju05g1301 951 MobiDBLite consensus disorder prediction 39 63 - -
Alju05g1301 951 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 319 943 - -
Alju05g1301 951 ProSiteProfiles Pumilio RNA-binding repeat profile. 626 661 IPR001313 GO:0003723
Alju05g1301 951 ProSiteProfiles Pumilio RNA-binding repeat profile. 770 806 IPR001313 GO:0003723
Alju05g1301 951 MobiDBLite consensus disorder prediction 129 158 - -
Alju05g1301 951 SUPERFAMILY ARM repeat 621 941 IPR016024 -
Alju05g1301 951 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 606 945 IPR033133 GO:0003723
Alju05g1301 951 FunFam Pumilio homolog 1 isoform 2 605 950 - -
Alju05g1301 951 SMART pum_5 734 769 IPR001313 GO:0003723
Alju05g1301 951 SMART pum_5 662 697 IPR001313 GO:0003723
Alju05g1301 951 SMART pum_5 807 841 IPR001313 GO:0003723
Alju05g1301 951 SMART pum_5 842 877 IPR001313 GO:0003723
Alju05g1301 951 SMART pum_5 770 806 IPR001313 GO:0003723
Alju05g1301 951 SMART pum_5 698 733 IPR001313 GO:0003723
Alju05g1301 951 SMART pum_5 626 661 IPR001313 GO:0003723
Alju05g1301 951 SMART pum_5 884 919 IPR001313 GO:0003723
Alju05g1301 951 ProSiteProfiles Pumilio RNA-binding repeat profile. 734 769 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1301 Alju-ChrAlju05 41722737 41729862 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1301 05 41722737 41729862 Alju05g1301 05 41722737 41729862 ECH