Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0997 ATGTTCTTCTCTCTCTACCCCTACTCTCTCTCCTCCTCTTCCTTCTTCTTCTTCTTCATCTTCTTCGCTTCGCCCTTACAATGCATTCTATCAAGAACTTTGCAACACCACCACTCGTCGTTCGCTGCTTCAATACCCATAACAATCTCCATTTCCAACGAACAAAGCTTCCAACGCCTTGTCCAAGCTTCAAGAGGCAGTCACATCACTGGCATTTCACATATCAAAAGATACTTTTCACATTTTGGCTATCTTCCATTGCAGAACATTACTACTTTGTCTGATGATTTCGACGAGGGATTTGAGTCGGCGCTTGTTCGATACCAACGGAACCTTGGCCTCGTCGTCACCGGCAGGCTTGACTCCGACACACTCAACCAGATTGAAACACCGAGATGCGGCGTGCTAGACATGGTGCATGATCATCATTATCATAGTGGTTTGCATTCTACAAAAAATTTCATGTATTTTCCCGGAAAACCACGGTGGGTACGTTCGATGCCGATGACTCTCACATACGCTATCTCGCCGGAGAACATGATTCAGAACCTGAGCTTAAGGGAGATAAGAGAAGCGTTTAAAAGAGCGTTCTCGAGGTGGGCTTCAGTGATTCCGGTGAGTTTCGTGGAGGCTGAAGACTACGGTTTCGCAGATATCAAAATAGGGTTTTACAGTGGCGACCATGGAGACGGAGAGCCATTCGACGGCATACTCGGCGTGCTGGCTCATTCATTCTCGCCAGAGAGCGGGAGGCTCCACCTGGACGCGGCTGAGACGTGGGCAGTGAATTTCCGGTCGGAGAAATCACCGGTGGCGGTGGATTTGGAGTCGGTGGCAACGCATGAGATTGGGCATTTGTTAGGGTTATCTCATAGCACAATGAAAGAGGCTGTGATGTATCCAAGTTTGAAGCCAAGAGATAAGAGAGCAGAACTGAACATGGACGACATTAAAGGAGTTCAATCTCTTTATGGATCAAACCCTAATTTTAAATACGAGTCGTCTTTAGAATCTGATATGTCGGCCAATGAAGCTTCCGATTTGGTGGGAGACAAATCTTTGAGGATTATTCTGAGTTGTTTCATCATGTTTTCTTTAGTTCATATTTTTTGTTTATGTCTATAG 1125 0.4587 MFFSLYPYSLSSSSFFFFFIFFASPLQCILSRTLQHHHSSFAASIPITISISNEQSFQRLVQASRGSHITGISHIKRYFSHFGYLPLQNITTLSDDFDEGFESALVRYQRNLGLVVTGRLDSDTLNQIETPRCGVLDMVHDHHYHSGLHSTKNFMYFPGKPRWVRSMPMTLTYAISPENMIQNLSLREIREAFKRAFSRWASVIPVSFVEAEDYGFADIKIGFYSGDHGDGEPFDGILGVLAHSFSPESGRLHLDAAETWAVNFRSEKSPVAVDLESVATHEIGHLLGLSHSTMKEAVMYPSLKPRDKRAELNMDDIKGVQSLYGSNPNFKYESSLESDMSANEASDLVGDKSLRIILSCFIMFSLVHIFCLCL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0997 374 Gene3D Collagenase (Catalytic Domain) 61 331 IPR024079 GO:0008237
Alju05g0997 374 PANTHER MATRIX METALLOPROTEINASE 52 330 - -
Alju05g0997 374 FunFam Metalloendoproteinase 1 62 330 - -
Alju05g0997 374 CDD ZnMc_MMP 162 325 IPR033739 GO:0008237|GO:0008270
Alju05g0997 374 SMART col_5 159 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Alju05g0997 374 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju05g0997 374 PRINTS Matrixin signature 128 141 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju05g0997 374 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju05g0997 374 PRINTS Matrixin signature 217 245 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju05g0997 374 PRINTS Matrixin signature 193 208 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju05g0997 374 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 155 328 - -
Alju05g0997 374 Pfam Putative peptidoglycan binding domain 73 127 IPR002477 -
Alju05g0997 374 Pfam Matrixin 167 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Alju05g0997 374 SUPERFAMILY PGBD-like 74 138 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0997 Alju-ChrAlju05 22729869 22730993 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g0997 05 22729869 22730993 Alju05g0997 05 22729869 22730993 ECH