Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2548 ATGCAGTGTTTTCTTTCATTGTTACTGGCTTTAGCCTCCTTACTGTTGCGGGTAGCGGTGGTATACAGCGGCTTGCCAAGGAGTTTTCTTCCTCTTGAACGGGCTATTCCTCTGGGCCATCCAGTGGAACTGGAAGTACTCAGAGCGCGTGACAGAGCCAGGCATGCTCGAATCTTGAAAGGTGCGGTAGGCGGTGTCGTCGACTTCTCAGTCGAAGGGACCTCCGATCCTTACGCCACCGGGTACGGGCTGTACTTTACGAAAGTGAAGCTGGGCTCTCCTCCAAGAGAATTTAGAGTCCAGATTGATACTGGAAGTGACATATTGTGGGTTGCTGGCGACGCTTGCAGCGATTGCCCTCGATCTAGTGACCTGGGGATTGAGCTCAATTTCTTTGATACAGTCAGCTCATCCACGGCCATGCTAGTGTCTTGCTCAGACCCAATATGTACTTCTGCGTTACAAAGTACTGGAACTGAATGCTCCCCTCAGATTAATCAGTGCAGCTACACTTTCGAGTATGGAGATGGAAGTGGAACATCAGGTTATTACGTATCTGATCTGATGCATTTTGACATGATGCTGGGACAATCCGTGCTTGCCAACTCTTCAGCTAATGTTGTTTTCGGGTGTAGCACCTATCAATCAGGAGAATTAACAAAGACGGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCGTTATCTGTTATTTCACAATTGTCATCACGAGGTGTAACACCTGGGGTCTTCTCTCATTGCCTTAAAGGAGAGGGAAGTGGAGGAGGCATATTAGTTCTTGGTGAGATCTTGGAACCAAGTATTGTTTATAGCCCACTAGTCCCATCACAGCCCCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACCCCTCCCAATTGATTCAGCTGTGTTTGCAACATTTAACAACCAAGGAACTATAGTTGACTCTGGTACAACATTGGCATACTTTGTTCAAGAAGCGTATGATCCTCTTATGAATGCTATCACTGCTGCTGTGTCACAATTGGCGAATCCAATTATTTCAAAAGGATACCAATGTTATCTGGTCCAAAGCAGCATAGGTGATACATTTCCTCCAGTCAGTTTAAATTTTGCTGGCGGGGCATCAATGGTTTTAAAACCTGAGCAGTACCTTATTCGTTATGGTTTCCTTGATGAATCTGCAATGTGGTGTGTTGGTTTCCAGAAGGTGCAAGAAGGGGTTACAATTTTAGGAGATATTGTCCTGAAAGATAAGATTTTTGTCTATGACTTGGTTCATCAACGAATTGGGTGGACTAACTATGATTGTTCCTTGTCTGTAAATGTCTCCCTGACCACGAGCAAGGATGAGTACATCAATGCAAGAAAGCGGAGTGCAAGTGGCTCACAGATGGACACTCTTACCAATTTGCTATCTGTTAGCATCGGCATTCTCATAGTGTACATATTAGTTTTCATGGAGTCCTTATAG 1491 0.448 MQCFLSLLLALASLLLRVAVVYSGLPRSFLPLERAIPLGHPVELEVLRARDRARHARILKGAVGGVVDFSVEGTSDPYATGYGLYFTKVKLGSPPREFRVQIDTGSDILWVAGDACSDCPRSSDLGIELNFFDTVSSSTAMLVSCSDPICTSALQSTGTECSPQINQCSYTFEYGDGSGTSGYYVSDLMHFDMMLGQSVLANSSANVVFGCSTYQSGELTKTDKAVDGIFGFGPGALSVISQLSSRGVTPGVFSHCLKGEGSGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQPLPIDSAVFATFNNQGTIVDSGTTLAYFVQEAYDPLMNAITAAVSQLANPIISKGYQCYLVQSSIGDTFPPVSLNFAGGASMVLKPEQYLIRYGFLDESAMWCVGFQKVQEGVTILGDIVLKDKIFVYDLVHQRIGWTNYDCSLSVNVSLTTSKDEYINARKRSASGSQMDTLTNLLSVSIGILIVYILVFMESL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2548 496 CDD pepsin_A_like_plant 85 443 IPR034161 -
Alju03g2548 496 Gene3D Acid Proteases 69 271 IPR021109 -
Alju03g2548 496 PANTHER ASPARTYL PROTEASES 23 437 IPR001461 GO:0004190|GO:0006508
Alju03g2548 496 FunFam Aspartic proteinase-like protein 2 272 450 - -
Alju03g2548 496 FunFam Aspartic proteinase-like protein 2 66 271 - -
Alju03g2548 496 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Alju03g2548 496 SUPERFAMILY Acid proteases 79 446 IPR021109 -
Alju03g2548 496 Gene3D Acid Proteases 272 449 IPR021109 -
Alju03g2548 496 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Alju03g2548 496 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Alju03g2548 496 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Alju03g2548 496 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Alju03g2548 496 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2548 Alju-ChrAlju03 51927129 51932564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2548 83 444 Miscellaneous Gene Families AT1G44130 28.871 5.62e-43 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1435 01 11386150 11390904 Alju03g2548 03 51927129 51932564 CCT
Alju03g2548 03 51927129 51932564 Alju03g2548 03 51927129 51932564 ECH