Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1252 ATGGAATCGAAGCTCTTTAGCAGATTCGCGATGCAAAGTTCGATTGCGAGTAGATCCTACTACACGAGTAGGACTAGGAAACCCTCCCTCTACAATAAAATCAGTCCACTTGGGAGCCCCAGCACCAGCGTGGTACCTGAGCTCGAGGATTGGGTCTATAAGGGGAACAAGATCCGCGTCGCCGAGCTTCAGCGCATTGTTCGAGATCTTCGCAAGCGCAGGAGGTTCACCCAAGCCCTAGAGGTATCTGAGTGGATGAATAAGAATGGTGTATGCATATTTTCACCCACTGAACATGCTGTGCATTTGGATCTGATGGGCAAAGTTCATGGATATACTTCTGCTGAAGGCTATTTTAATAGCTTGAAAGAAGAAGATAAAAATAATAAGACGTATGGTGCTCTCTTGAATTGCTATACACGGCAGCGCCAAACTGAGAAAGCCCTCTCCCATGTGCAGAAAATGAAGGAGTTGGGGATTGCTTCATCACCTCTAAGTTACAATGATATTATGTGTCTATACACCAACATTGGTCAGCCTGAGAAGGTCCCTGAAGTGCTAATCGAGATGAAAAAGAACAATGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATGCTTTTGGTGCGAGGTCTGATATTGATGGAATTGAAAGAACACTAAAAGAGATGGAAAACCAATCTCACATTGTCATGGACTGGAACACTTACGCTGTTGTGGCTGATTTCTATATAAAAGCAGGACTTAAGAGTAAGGCAGTTGATGCCCTTAAGAAAGCGGAGGAGCGGCTAGATAAGAAGGATGGCCTTGGTTACAATTTTCTTATTTCTCTTTATGCTCGCCTTGGAGACAAGACTGAGGTCATCAGATTATGGGAACGGGAGAAGATTGATTGCAAGAGGTGCATAAACAGAGATTTCAGCACCATGTTAGAATCTCTGGTAAGGCTTGGTGAGCTGGATGAAGCTGAGAAATTATTCAAGGAATGGGAGTCCTCTGGAAATTGTTATGATCCTCACATCCCGGATGTTGTCATCACTGGATACTCACAAAAAGGTTTGCACGAGAAAGCCGAAAGCATTCTGAAAACCTTACAAAAGAGGGGGAAGGCGGCCATGTCAAACAGTTGGACTGAAGTGGCAGGTGGATACCTTCGTAAGGGTGAGATGGAGAAAGCATTTGATTGCTTTAAAGCAGCCCTACAGGCTGAAAATAAAGGATGGAAGCCGAATCCTAGGGTGTTCTCGGGCATAGTTAGTTGGCTTGGTGATAACGGAAGTGTTGAAGAAGTAGAAGCTTTGGTGGGCTCCCTGAGAAATCTTGTCCCAGTAAACAGAAGAATGTACAACGCCCTCATCAAGGCTTATGTAAGACATGGAAAAGAAGTAGATGGGCTTTTGGATCGTATGAAGAAAGATAACATTGATGAAGACGAAAAAACGAAAGAAATTCTTGATATGAGGAAGCCGTAG 1476 0.439 MESKLFSRFAMQSSIASRSYYTSRTRKPSLYNKISPLGSPSTSVVPELEDWVYKGNKIRVAELQRIVRDLRKRRRFTQALEVSEWMNKNGVCIFSPTEHAVHLDLMGKVHGYTSAEGYFNSLKEEDKNNKTYGALLNCYTRQRQTEKALSHVQKMKELGIASSPLSYNDIMCLYTNIGQPEKVPEVLIEMKKNNVLPDNFSYRICINAFGARSDIDGIERTLKEMENQSHIVMDWNTYAVVADFYIKAGLKSKAVDALKKAEERLDKKDGLGYNFLISLYARLGDKTEVIRLWEREKIDCKRCINRDFSTMLESLVRLGELDEAEKLFKEWESSGNCYDPHIPDVVITGYSQKGLHEKAESILKTLQKRGKAAMSNSWTEVAGGYLRKGEMEKAFDCFKAALQAENKGWKPNPRVFSGIVSWLGDNGSVEEVEALVGSLRNLVPVNRRMYNALIKAYVRHGKEVDGLLDRMKKDNIDEDEKTKEILDMRKP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1252 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Alju03g1252 491 Pfam PPR repeat 131 160 IPR002885 -
Alju03g1252 491 Pfam PPR repeat 377 399 IPR002885 -
Alju03g1252 491 Pfam PPR repeat 449 475 IPR002885 -
Alju03g1252 491 Pfam PPR repeat 345 370 IPR002885 -
Alju03g1252 491 Pfam PPR repeat 308 335 IPR002885 -
Alju03g1252 491 Pfam PPR repeat 273 295 IPR002885 -
Alju03g1252 491 SUPERFAMILY TPR-like 217 444 IPR011990 GO:0005515
Alju03g1252 491 Pfam PPR repeat family 166 209 IPR002885 -
Alju03g1252 491 PANTHER OS12G0527900 PROTEIN 26 478 - -
Alju03g1252 491 SUPERFAMILY TPR-like 131 410 IPR011990 GO:0005515
Alju03g1252 491 FunFam Pentatricopeptide repeat-containing protein mitochondrial 60 271 - -
Alju03g1252 491 NCBIfam pentatricopeptide repeat 131 160 IPR002885 -
Alju03g1252 491 NCBIfam pentatricopeptide repeat 166 198 IPR002885 -
Alju03g1252 491 NCBIfam pentatricopeptide repeat 308 338 IPR002885 -
Alju03g1252 491 Gene3D Tetratricopeptide repeat domain 300 404 IPR011990 GO:0005515
Alju03g1252 491 Gene3D Tetratricopeptide repeat domain 405 487 IPR011990 GO:0005515
Alju03g1252 491 Gene3D Tetratricopeptide repeat domain 60 299 IPR011990 GO:0005515
Alju03g1252 491 ProSiteProfiles TPR repeat profile. 375 408 IPR019734 GO:0005515
Alju03g1252 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1252 Alju-ChrAlju03 41048056 41050034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1252 29 474 EF-hand Containing Proteins AT1G02150 33.406 1.08e-83 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1252 03 41048056 41050034 Alju03g1252 03 41048056 41050034 ECH