Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0858 ATGAACCCAAGTCCACAATGCGCAGCTAAGAAAAAGGATACTTCGTGAGGCGTATATATATACATATACTCCTCTTTGTTTCATTCTCTGTATGAGGCTACCATCATTGCGAGGTTGCTTCTTTCATTTTGTTCGTCTTTGATTTTTCATTCCTTCCGTCTTCTGTCTTCGCATCATATTCATAGGCGTGGATCTAGTGCCATTTTATCTGTTTTGATTCTGAAGATAATCGACAAGATGCTTGAAATGGCAACATATACCCCAAAGAATATCCTCATCACTGGGGCAGCCGGATTCATTGCATCTCATGTTGCCAACCGGCTCATCCGGAACTACCCAGCCTACAAAATTGTTGTTCTCGACAAACTTGATTACTGTTCAAATTCGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGACATTGCAAGCGCCGACCTTGTCAACTACCTTCTTATCACTGAGTCCATAGACACAATAATGCACTTTGCTGCTCAGACCCATGTGGACAACTCGTTTGGTAATAGCTTTGAGTTCACTAAGAACAACATATATGGTACTCACGTCCTGTTAGAAGCCTGCAAGGTCACTGGTCAGATCAGAAGGTTCATTCATGTGAGCACCGATGAGGTCTATGGGGAGACAGATGAGGATGCTGTTGTTGGAAATCATGAGGCTTCCCAACTTCTTCCCACAAATCCATACTCTGCCACGAAAGCTGGTGCAGAAATGCTGGTCATGGCATATGGTAGGTCATATGGGTTGCCTGTGATAACAACTCGTGGAAATAATGTCTATGGGCCCAATCAGTTTCCAGAGAAGCTAATTCCAAAGTTCATCCTCTTAGCTATGCAAGGCAAGCCTCTCCCAATTCACGGAGATGGTTCGAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAGGTTATACTTCACAAAGGAGAGGTTGGTCATGTCTACAATATTGGGACAACGAGAGAAAGGAGAGTTATTGATGTAGCCAAAGATATAGGCAGACTTTTCTCAATGGACCCTGATTCTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGGTACTTTCTTGATGATCAAAAGTTGAAGAACTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGACTGAAGAAAACCATAGAGTGGTATACCAAGAATCCTGATTGGTGGGGTGATGTCAGCGGGGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCGGGTGGGATGGAGAGACATTTTGATGGCTCTGAAGAAGATACGCCCGCATCCTTTGCTTCCAGCAATACTCGGATGTTGGTTCCATCTTCTAAGAACACTAGCACTCAGCAGAAACATGCTTATAAGTTCTTGATCTATGGTAGAACAGGGTGGATCGGGGGTCTGTTAGGGAAACTCTGTGAAAAACAAGGGATTCCATTTGAATATGGAACAGGACGCTTAGAGGATCGCTCATCACTCGTGGCAGATATCCAAACTGTGAAGCCTACACATGTTTTCAATGCTGCTGGAGTGACTGGCAGACCTAATGTTGACTGGTGTGAATCTCATAAAACAGAAACCATTCGCACCAACGTTGCTGGTACTTTAACACTGGCAGATGTTTGCAGAGAACAGGGGCTCTTAATGGTGAATTATGCCACTGGGTGTATATTTGAGTATGATGCAGCACATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTCACTGGTTCTTTCTATTCCAAAACTAAAGCTGTGGTCGAAGAGCTTTTGAAAGAATATGACAATGTGTGCACTCTGAGGGTTCGCATGCCAATTTCATCTGATCTGAGTAACCCACGCAACTTCATTACAAAGATCACTCGTTACAACAAAGTGGTTAACATTCCAAACAGCATGACTATCTTGGACGAACTTTTGCCTATTTCAATCGAAATGGCAAAGCGAAACTTGCGTGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATCCTTGAGATGTACAGGGATTACATTGATCCCAACTTCAAGTGGGTTAACTTCACACTTGAAGAGCAAGCCAAGGTGATAATTGCTCCAAGAAGCAACAATGAGATGGATGCATCCAAACTGAAGAAAGAGTTCCCAGAGTTGCTTTCCATCAAGGAATCACTGGTCAAATCCGTCTTTGAACCAAACAGGAAAACCCATACAAAATAA 2262 0.4346 MNPSPQCAAKKKDTSXGVYIYIYSSLFHSLYEATIIARLLLSFCSSLIFHSFRLLSSHHIHRRGSSAILSVLILKIIDKMLEMATYTPKNILITGAAGFIASHVANRLIRNYPAYKIVVLDKLDYCSNSKNLIPSKSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTRERRVIDVAKDIGRLFSMDPDSSIKFVENRPFNDQRYFLDDQKLKNLGWSERTTWEEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGMERHFDGSEEDTPASFASSNTRMLVPSSKNTSTQQKHAYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGTGRLEDRSSLVADIQTVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMVNYATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAVVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKITRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWVNFTLEEQAKVIIAPRSNNEMDASKLKKEFPELLSIKESLVKSVFEPNRKTHTK 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0858 753 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 462 741 IPR036291 -
Alju02g0858 753 Gene3D - 91 395 - -
Alju02g0858 753 FunFam UDP-glucose 4,6-dehydratase 91 291 - -
Alju02g0858 753 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 85 420 - -
Alju02g0858 753 CDD dTDP_GD_SDR_e 89 406 IPR005888 GO:0008460|GO:0009225
Alju02g0858 753 CDD dTDP_HR_like_SDR_e 467 739 - -
Alju02g0858 753 Gene3D - 455 753 - -
Alju02g0858 753 Gene3D - 282 404 - -
Alju02g0858 753 Pfam GDP-mannose 4,6 dehydratase 92 397 IPR016040 -
Alju02g0858 753 Pfam RmlD substrate binding domain 467 639 IPR029903 -
Alju02g0858 753 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 414 IPR036291 -
Alju02g0858 753 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 457 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0858 Alju-ChrAlju02 6447431 6450673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0858 90 401 Miscellaneous Gene Families AT4G00110 26.786 3.47e-20 92.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0858 02 6447431 6450673 Alju02g0858 02 6447431 6450673 ECH