LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g0794	ATGAGAAACATTTCAAAACCAGAATGCTTCATCTTCATTCTTGTTGTTCTAGCAGTAGTTCTTGAGGTTGAAGGTCGTTTTCTGCAAAACAGTGTTTCTTCTTCTGCATTGTTGACTTCCGATGGAGTTGACGAAGGTGATAGTGTTCAACCCCAGAAGAATTCTCACTTGTTTCTCTGGGGGAATACCAGAAAAACCGAACATTCTGAAGAAGAGTGTGATCAAATGTACGGCTTCTTGCCCTGTTCAACTAGCATGTTTGGCCATCTCTTTCTTATTCTGGTTTATGAGTTCTTGTTGTTTCATGGAGAATCATACTTGGCTTCTGGGGGTGAACAAATCTTCAAGATTCTTGGCCCTGGCCTTTTTGGTGCAAGTGCCTTTGATCTTCTGGGTGCCCTTCCTGAATCTTTGATTCTTCTTGTTACTGGGCTTTCCAGAGAGACAAAGGAGAGTGCACAAGAGTATGCTTCCACTGGAGTAGGCATGTTGGCCGGATCATCCATCTTGCTCCTCACAATAGTTTGGGGAACCTGTGTCATCACTGGCAGGCAAAACTTGAAAACTGACTCAAGGCATAAATCCTCTCATTATTCTAATCCATCAGCTTCAACTCCTACAGAATTATTATCTGGTTTTGGGATTACTATGGATAAAGAGACAAAGGAAATGGCAAGAATCATGGTTCTCTCAGTTACACCACTCCTAATTATGCAGATTCCCAGTGTGTTTCGATTCTCTTCGGTGCTTCGCTCTGTGACCTTGATGATTGCTCTTATTGTTACTGTCATTTTTGTCTTCTCCTACTTCATTTATCAGATATTCAAACCTCATATAGAGAAAACAAGGCTAGAATACATAAAGCATCATGATTTAATATTGAGAATTTTCGAGCATGTTGAAAAGCAAACCCTTCAAAAGATCCTCACTGAGGATGGATCTCCCAATGTGGCAGCCATCAATGGGCTATATAAAGAAATTAGTCGGCACGGTGGAGAGAGGGATTTATTAGCTTCTGAAGTGAAAGAGCTGCTGCTTAAGAACAAACTAAATGGGGCAAACATCTCAGACGAACAAGTTGAAGACATGTTAAGAGTGTTTGATCGAAATAATGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGATTAACACAGTGGATTGAGCAAACCAAGCATGCTTTGGATAGACAATACATGCCAAGAAAATCACTCCAGAACATTTATCAGGGTTTTCTGAAGCCATGGATGGAACACACAAGAAAAGAGCGTGAAATGAAGGGACATATTATATCTGAAATCTTAAGGCATGCTCAGAACGATATGGTTGGGGGGCTTCTCAATGATGATGGAACGGCGGATGAGTCTGCTATAAGAAGGTTGTTTGAGGAAGTTGATAGCAATGGAGATAACTGTGTTTCTCAATCCGAGTTAAGGAAACTAGTGACAAGCCTCCACATGGGTAAGGCAGTGGATGAGGAGGAAGCAGTCAAGAAAATAATTCAAGATTTTGATATGAACAGTGACAATATGATTAATGAGGAAGAATTTGTCGATGGATTCACAAAATGGCTACTTTCATCTTCCAGACAAGCTCCACACTCAAAAACTCTGCCTCATGAAGAAGAAAACCATCAAACCTGGGAATATGTGGAGAAGGTTGTGGAAGAGAATCATCAGGACAAAGGAATATATGGATGGATCGTAGCTATAATGAATGTGGTGCTAGGAATCACTATATTATCAATTCTTGCAGAGCCATTAATAGCAAGTGTCCAGAAATTTTCTGCACAAGCAGGAATCCCATCTTTCTTTGCCTCATTCATTTTAGTCCCTCTGGCGACAAATTTTAGAGAAGCAACCTCAGCCATCAAAGAAGCTAGTCACAAGAAGAGAAGTAACACTTCTCATACAATCTATGAGATTTATGGAGCAGTATTTATGAACAACATTCTTGGATTTGCTGCAATTGCGACTCTGATATATGTGAGAGAAATAACGTGGGAATTTTCAGCTGAAGTGCTGGTTGTGGCAATAGTTTGTTCTGTAATGGGCCTGTTTGCAAGTTTTCGGCCCAATTTTCCTCTGTGGACATCCTTCGGAGCTTACCTTTTATATTTGCTGTCTTTAGTTTTGGTTTATGTTCTCAATGATGTTCTTCATTATGATTGA	2172	0.4015	MRNISKPECFIFILVVLAVVLEVEGRFLQNSVSSSALLTSDGVDEGDSVQPQKNSHLFLWGNTRKTEHSEEECDQMYGFLPCSTSMFGHLFLILVYEFLLFHGESYLASGGEQIFKILGPGLFGASAFDLLGALPESLILLVTGLSRETKESAQEYASTGVGMLAGSSILLLTIVWGTCVITGRQNLKTDSRHKSSHYSNPSASTPTELLSGFGITMDKETKEMARIMVLSVTPLLIMQIPSVFRFSSVLRSVTLMIALIVTVIFVFSYFIYQIFKPHIEKTRLEYIKHHDLILRIFEHVEKQTLQKILTEDGSPNVAAINGLYKEISRHGGERDLLASEVKELLLKNKLNGANISDEQVEDMLRVFDRNNDQIITKEEFVTGLTQWIEQTKHALDRQYMPRKSLQNIYQGFLKPWMEHTRKEREMKGHIISEILRHAQNDMVGGLLNDDGTADESAIRRLFEEVDSNGDNCVSQSELRKLVTSLHMGKAVDEEEAVKKIIQDFDMNSDNMINEEEFVDGFTKWLLSSSRQAPHSKTLPHEEENHQTWEYVEKVVEENHQDKGIYGWIVAIMNVVLGITILSILAEPLIASVQKFSAQAGIPSFFASFILVPLATNFREATSAIKEASHKKRSNTSHTIYEIYGAVFMNNILGFAAIATLIYVREITWEFSAEVLVVAIVCSVMGLFASFRPNFPLWTSFGAYLLYLLSLVLVYVLNDVLHYD	723

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g0794	723	Pfam	EF-hand domain pair	456	519	IPR002048	GO:0005509
	Alju02g0794	723	ProSiteProfiles	EF-hand calcium-binding domain profile.	492	527	IPR002048	GO:0005509
	Alju02g0794	723	ProSiteProfiles	EF-hand calcium-binding domain profile.	453	488	IPR002048	GO:0005509
	Alju02g0794	723	ProSiteProfiles	EF-hand calcium-binding domain profile.	355	390	IPR002048	GO:0005509
	Alju02g0794	723	Pfam	Sodium/calcium exchanger protein	574	714	IPR004837	GO:0016020\|GO:0055085
	Alju02g0794	723	Gene3D	-	392	536	-	-
	Alju02g0794	723	Gene3D	-	314	391	-	-
	Alju02g0794	723	ProSitePatterns	EF-hand calcium-binding domain.	466	478	IPR018247	-
	Alju02g0794	723	ProSitePatterns	EF-hand calcium-binding domain.	505	517	IPR018247	-
	Alju02g0794	723	SUPERFAMILY	EF-hand	342	525	IPR011992	-
	Alju02g0794	723	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	75	715	IPR004713	GO:0006812\|GO:0008324\|GO:0016020
	Alju02g0794	723	SMART	efh_1	359	387	IPR002048	GO:0005509
	Alju02g0794	723	SMART	efh_1	496	524	IPR002048	GO:0005509
	Alju02g0794	723	SMART	efh_1	457	485	IPR002048	GO:0005509
	Alju02g0794	723	ProSitePatterns	EF-hand calcium-binding domain.	368	380	IPR018247	-
	Alju02g0794	723	CDD	EFh	458	522	IPR002048	GO:0005509
	Alju02g0794	723	Pfam	EF-hand domain pair	351	384	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g0794	Alju-ChrAlju02	5859173	5863517	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju02g0794	408	717	EF-hand Containing Proteins	AT1G53210	41.088	6.56e-68	232

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju02g0794	02	5859173	5863517	Alju02g0794	02	5859173	5863517	ECH