Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3570 ATGGTCAGAACCAGAGCCAGAGCGCCTCACACCGTTTCAAGCCTTTCAAGGAAAGAGGACATTTGTCCTTCCTCATGCTCTTTGACGAAGATGGGTTCTGGTTGGAAAGTGGGAAATAGCAGTCTTGATTACTCTTTTAAGGTATTGTTGATTGGCGATTCTGGGGTTGGCAAGAGCTGTCTTCTTCTCAGCTTCATCTCCAACTCTGTTCACGACCTCTCTCCCACTGTTGGGGTGGACTTCAAGATCAAGCTCCTTACAATTGGTGGTAAAAGATTGAAACTTACTATTTGGGACACAGCGGGCCAGGAGAGGTTTGGAACAGTGATAAGCTCTTGTTACAGAGGTGCGCATGGAATCATTCTTGTCTATGATGTGACACGGCGTGAATCATTTAAAAACTTGGAGGACTTATGGGCAAAAGAAGTTGAACTCTACAGCACTAATCCTGAGTGCATCAAAGTTCTAGTTGGGAATAAGGTGGATAAGGACAGTGAAAGAGTTGTAACCAGGGAAGAGGGTATGGCTCTTGCACAGAAACATAGATGCTTGTTCGTAGAGTGTAGTGCTAAAACTAGAGAAAATGTTCAGCAATGCTTTGATGATCTCTCCTTGAAGATGTTAGAGGTCCCGAGTTTACGGGAAAAAGGATCTGTAGTAGTGAAGAAACAGAAGCAAAAACACGCCTATGAGAGGATGCATCGAGGCGGAGGCTGTTGTTTAGATTAA 729 0.4431 MVRTRARAPHTVSSLSRKEDICPSSCSLTKMGSGWKVGNSSLDYSFKVLLIGDSGVGKSCLLLSFISNSVHDLSPTVGVDFKIKLLTIGGKRLKLTIWDTAGQERFGTVISSCYRGAHGIILVYDVTRRESFKNLEDLWAKEVELYSTNPECIKVLVGNKVDKDSERVVTREEGMALAQKHRCLFVECSAKTRENVQQCFDDLSLKMLEVPSLREKGSVVVKKQKQKHAYERMHRGGGCCLD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3570 242 SMART ran_sub_2 51 242 - -
Alju01g3570 242 ProSiteProfiles small GTPase Rab1 family profile. 41 240 - -
Alju01g3570 242 ProSiteProfiles small GTPase Rho family profile. 39 208 - -
Alju01g3570 242 Pfam Ras family 47 207 IPR001806 GO:0003924|GO:0005525
Alju01g3570 242 PANTHER RAS-RELATED PROTEIN RAB 45 220 - -
Alju01g3570 242 NCBIfam small GTP-binding protein domain 44 201 IPR005225 GO:0005525
Alju01g3570 242 CDD Rab18 46 206 - -
Alju01g3570 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 225 IPR027417 -
Alju01g3570 242 Gene3D - 38 236 IPR027417 -
Alju01g3570 242 ProSiteProfiles small GTPase Ras family profile. 40 241 IPR001806 GO:0003924|GO:0005525
Alju01g3570 242 SMART rab_sub_5 46 210 - -
Alju01g3570 242 FunFam Ras-related protein RABC1 39 240 - -
Alju01g3570 242 SMART ras_sub_4 43 210 - -
Alju01g3570 242 PRINTS Transforming protein P21 ras signature 185 207 - -
Alju01g3570 242 PRINTS Transforming protein P21 ras signature 68 84 - -
Alju01g3570 242 PRINTS Transforming protein P21 ras signature 86 108 - -
Alju01g3570 242 PRINTS Transforming protein P21 ras signature 150 163 - -
Alju01g3570 242 PRINTS Transforming protein P21 ras signature 46 67 - -
Alju01g3570 242 SMART rho_sub_3 48 210 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3570 Alju-ChrAlju01 64780594 64784387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3570 45 200 EF-hand Containing Proteins AT5G27540 26.087 6.98e-10 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g3570 01 64780594 64784387 Alju03g2573 03 52117385 52119410 CCT
Alju01g3570 01 64780594 64784387 Alju01g3570 01 64780594 64784387 ECH