Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2335 ATGCTCTACTCCGCCTCTTTTCACGGCTTTATCAGAACCACCACTTCTACTTCAACCACCATGTCCCTCAGGGGTCCCCTTTTCTTCTTACCCCACAGAGCTCGAAGACTCTCACTTCTATCCTTTTTCTTGAGACATCCTTCACTTGGCTTGAGGAATTTTCATGCGCCCTCAAAGATAAGGTCTCACGCAGGGGCTATGAGCTCAGTGGAGTCTTCTAGGACAACTGAGGTGGATTGGAAGGAGAGGCAAGTTGTGGGCTTCAGGCGGAGGAACATTGCTTTGCCATTTTGGCATCACCAGAGCTCCAGTTACGGTCGTTTTGCTTACCAGGATGTGTCTAGTGATGATTCCGATTTGGAATCGGGGCCTCCTCAGCAACAAATGGGTGGTTCATCCCTTGATAACATTGATGAGTGGAGATGGAAGCTGACCATGCTTCTTCGCAACAAAGAAGAGCGAGAAGTACTTTCAAGAGATAAAAAGGACAGACGTGATTTTGAGCATCTCTCAGCTTTAGCAACTAGGATGGGTTTATATAGCCAGCAATATTCAAAAGTAGTTGTCTTTAGCAAGGAACCTTTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAGGTTGTCATACCTTTTCGTGTTCATGGAGAAGTAAATTCTCTTCTCAATGCTCACCTCTCTAAAAAGTCTAGAAGCTTTGGAGGCATTGTAGATACATCCTTCCATAGATCAAGCAGTGCTGGCATTCCTGCGGATGAAGGAGTTCTCGAGGAGCCAGAGCCCTTAGCAAAGAATAATGTTGTCAGGGAGAAAATCCTTCGACGAAGAAGTTTGCAATTGCGTTATCAACAAAAAGAATGGCAGGAGTCTCCTGATGGACAAAAGATGCTTGAATTTCGTAGATCTCTTCCTGCATTCAAGGCGAAGGATGCATTACTGAAAACCATTTCAGAGAACCAGGTTGTTGTGGTCTCAGGTGAAACTGGTTGTGGTAAGACCACGCAACTTCCACAATATATATTAGAGTCTGAGATTGAAGCTGCACGTGGTGCTGTCTGTAGCATAATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAGCGTGGGGAAAAATTGGGAGAATCTGTTGGTTACAAGGTTCGTCTGGAGGGTATAAAAGGAAGGGATACTCGTCTTCTGTTTTGCACTACAGGTGTATTGTTGAGGAGACTACTTGTAGACAGAAATCTAAAAGGTGTGACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTCCTTGTTGTCCTAAAGGATCTTCTTCCATGCCGTCCAGACCTTAGGTTAATTTTGATGAGTGCAACCTTAAATGCCGAGCTTTTTTCTTCCTACTTTGGTGGGGCGCCAACTTTACATGTGCCTGGCTTTACATATCCAGTTCGAACACAATTTCTTGAGGATATTCTGGAAATGACTAGATATCGTTTGACACCTTATAATCAAATTGATGATTATGGTCAAGAGAAGACATGGAAAATACAAAAACAGGTTCAAGGTTTGAGAAAAAGAAAGACCCAGATTGCTTCTGCTGTTGAGGATGCACTTGAAGCTGCTGATTTCAAGGAGTACAGCTTATGCACCCGGGAGTCATTATCCTGCTGGAGTCCCGATTCAATTGGTTTTAACCTTATTGAACATGTTATCTGCCACATTGTCAAGAATGAAAGGCCAGGTGCTATTTTGGTTTTTATGACTGGTTGGGATGACATAAATTCTTTAAAGGATCAGCTCCAAGCTCACCCTCTGTTGGGCGATCCAAGCAAAGTTTTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGATAATCCTGAAGGAGGAGTGAGGAAAATAGTTCTTGCCACTAACATGGCTGAGACTAGTATTACCATCAATGATGTCGTCTTTGTGATTGATTGTGGGAAAGCAAAAGAGACATCTTATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGAGAAGAGGAAGGGCAGGACGTGTTCAACCAGGCGAATGTTACCATCTTTATCCTAGATGTGTTTATGATACTTTTGCTGATTATCAATTGCCGGAGCTTTTAAGAACACCTTTACAATCCCTATGTCTTCAAATCAAAAGTCTAAACCTTGGCAGCATTTCAGAATTCCTATCCAGAGCTCTGCAACCACCAGAGCCTCTGTCGGTTCAAAATGCTGTTGAATATTTGAAGATTATTGGGGCCTTGGATGACAATGAAAATCTGACAGTTTTAGGTCGTAACTTGTCAATGCTCCCTGTAGAGCCTAAACTTGGAAAGATGCTTATCTTAGGAGCTATCTTCAACTGTTTAGATCCCATAATGACTGTTGCTGCGGGTCTTAGTGTTAGAGATCCATTTTTGATGCCATTTGACAAGAAGGATCTTGCAGAGTCTGCCAAGGCCCAGTTTGCTGCTGGTGCCTATAGTGATCATGTTGCACTTGTTCGGGCTTATGAGGGTTGGAGCAATGCTGAAACACAGAAAGCAGGTTATGAGTACTGTTGGAGAAATTTCCTCTCTTCACAAACACTTAGAGGCATTGAATCTCTTCGAAAGCAGTTTTTTTACTTGCTCAAAGATATAGGGTTGGTTGACTATAATACTGACAATTGCAATGCATGGAGTCATGATGAGCATCTGGTCCGAGCGGTCATTTCAGCTGGTTTATTTCCTGGAGTATGCTCTGTTGTGAACAAAGAAAAGTCAATAGCATTGAAAACAATGGAGGATGGTCAAGTTCTTCTGTATGCTAACTCTGTAAATGCCAGTGTACCCAAAATTCTATTCCCATGGCTGGTATTCAATGAAAAGGTGAAGGTGAATTCAGTATTCCTCCGGGATTCAACTGGTATATCTGATTCAATGCTTCTCTTATTTGGTGGGAATGTTTCGAGAGGTGGACTGGACGGTCACCTGAAAATGCTTGGGGGATATTTGGAATTTTTCATGAATCCTGCCTTAGCTGAGACTTACTTAAGCCTGAAGAAGGAGCTGGAGGAATTAATACATAGAAAACTTCTGGATCCCAAGATGGATATACAATCATCTGTTGAGCTTCTTTCAGCTGTGAGATTGCTAGTATCGGAGGACCAGTGTGCTGGGAAATTTGTCTTTGGTCGTCAAGTGTTGTCACCATCAAATAAGACAAAAGACTCCAAAAATAATTCCATTGAGAGTAGTAATCATAAAAACCAGCTGCAAACATTGCTTGCCAGGGCTAGACATGAATCGCCAACTTACAAAACAAAACAACTTAAAAACAACCAGTTCCGCTGTACTGTCATATTCAATGGCTTGAATTTTGTTGGCCAGCCTTGCAACAGCAAGAAGCAAGCAGAACAGGACGCTGCTTCTGAGGCTCTTCTGTGGTTAATGGGGGATAAACATTCATCTAGTGATGACATTGGCGAGCTGCAATCATTGCTTGGCGCGGGTCGACATAAACCATCAAAGAAGGGAGAAGACTCCAAAAGTAGTTCTGTTGAGAGTGGTGATCGTAAAGGCCAGATGCAAACATTGCTTGCCAGGGGTCGAAAAGGCCAGCTGGAAAACTCTAGAAGTAGTTCTGTTGAGAGTGTTGATTGTAAAGGCCAGCTACAAACATTGCTTGCCAGGGCTGGACATGAACCACCAACTTACAAAACAAAACAAGTGGGAAGCTACCAATTCCGTTCTACCGTCACATTCAATGGCTTGAATTTTGCCGGCCACCCTTGCAACAGCAGGAAACAAGCAGAAAGGGATGCTGCTGCTGAGGCTCTTCTATGGTTAAAGGGTGATACACGTCCACGTGATGATTACGATGATGATGATGATGTTGTTGACGATATGTCTTTCCCTTTTAAAAAAAGCAACAAAAGAAGCAAAATTTCACTGAATGGTGGTAGAAGAAGATAA 4029 0.4286 MLYSASFHGFIRTTTSTSTTMSLRGPLFFLPHRARRLSLLSFFLRHPSLGLRNFHAPSKIRSHAGAMSSVESSRTTEVDWKERQVVGFRRRNIALPFWHHQSSSYGRFAYQDVSSDDSDLESGPPQQQMGGSSLDNIDEWRWKLTMLLRNKEEREVLSRDKKDRRDFEHLSALATRMGLYSQQYSKVVVFSKEPLPNYRSDLDDKRPQREVVIPFRVHGEVNSLLNAHLSKKSRSFGGIVDTSFHRSSSAGIPADEGVLEEPEPLAKNNVVREKILRRRSLQLRYQQKEWQESPDGQKMLEFRRSLPAFKAKDALLKTISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLVVLKDLLPCRPDLRLILMSATLNAELFSSYFGGAPTLHVPGFTYPVRTQFLEDILEMTRYRLTPYNQIDDYGQEKTWKIQKQVQGLRKRKTQIASAVEDALEAADFKEYSLCTRESLSCWSPDSIGFNLIEHVICHIVKNERPGAILVFMTGWDDINSLKDQLQAHPLLGDPSKVLLLACHGSMASSEQRLIFDNPEGGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDTFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDDNENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPIMTVAAGLSVRDPFLMPFDKKDLAESAKAQFAAGAYSDHVALVRAYEGWSNAETQKAGYEYCWRNFLSSQTLRGIESLRKQFFYLLKDIGLVDYNTDNCNAWSHDEHLVRAVISAGLFPGVCSVVNKEKSIALKTMEDGQVLLYANSVNASVPKILFPWLVFNEKVKVNSVFLRDSTGISDSMLLLFGGNVSRGGLDGHLKMLGGYLEFFMNPALAETYLSLKKELEELIHRKLLDPKMDIQSSVELLSAVRLLVSEDQCAGKFVFGRQVLSPSNKTKDSKNNSIESSNHKNQLQTLLARARHESPTYKTKQLKNNQFRCTVIFNGLNFVGQPCNSKKQAEQDAASEALLWLMGDKHSSSDDIGELQSLLGAGRHKPSKKGEDSKSSSVESGDRKGQMQTLLARGRKGQLENSRSSSVESVDCKGQLQTLLARAGHEPPTYKTKQVGSYQFRSTVTFNGLNFAGHPCNSRKQAERDAAAEALLWLKGDTRPRDDYDDDDDVVDDMSFPFKKSNKRSKISLNGGRRR 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2335 1342 Pfam Helicase conserved C-terminal domain 574 705 IPR001650 -
Alju01g2335 1342 MobiDBLite consensus disorder prediction 1188 1237 - -
Alju01g2335 1342 FunFam DExH-box ATP-dependent RNA helicase DExH3 260 484 - -
Alju01g2335 1342 Gene3D - 263 484 IPR027417 -
Alju01g2335 1342 SMART DRBM_3 1239 1302 IPR014720 -
Alju01g2335 1342 SMART DRBM_3 1106 1169 IPR014720 -
Alju01g2335 1342 SUPERFAMILY dsRNA-binding domain-like 1105 1176 - -
Alju01g2335 1342 Gene3D - 567 724 IPR027417 -
Alju01g2335 1342 CDD DEXHc_RHA-like 322 482 - -
Alju01g2335 1342 MobiDBLite consensus disorder prediction 1191 1206 - -
Alju01g2335 1342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 483 IPR014001 -
Alju01g2335 1342 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 746 IPR001650 -
Alju01g2335 1342 Gene3D - 748 850 - -
Alju01g2335 1342 Pfam Double-stranded RNA binding motif 1107 1168 IPR014720 -
Alju01g2335 1342 Pfam Double-stranded RNA binding motif 1240 1301 IPR014720 -
Alju01g2335 1342 SUPERFAMILY dsRNA-binding domain-like 1236 1303 - -
Alju01g2335 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 867 IPR027417 -
Alju01g2335 1342 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 925 1007 IPR011709 -
Alju01g2335 1342 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1105 1170 IPR014720 -
Alju01g2335 1342 MobiDBLite consensus disorder prediction 1304 1323 - -
Alju01g2335 1342 PANTHER ATP-DEPENDENT RNA HELICASE 248 1065 - -
Alju01g2335 1342 Pfam DEAD/DEAH box helicase 314 467 IPR011545 GO:0003676|GO:0005524
Alju01g2335 1342 FunFam DExH-box ATP-dependent RNA helicase DExH3 568 724 - -
Alju01g2335 1342 MobiDBLite consensus disorder prediction 1089 1108 - -
Alju01g2335 1342 CDD DSRM_SF 1111 1165 - -
Alju01g2335 1342 Pfam Helicase associated domain (HA2) 769 842 IPR007502 GO:0004386
Alju01g2335 1342 CDD SF2_C_RHA 563 714 - -
Alju01g2335 1342 SMART ha2_5 768 859 IPR007502 GO:0004386
Alju01g2335 1342 FunFam Putative ATP-dependent RNA helicase DHX36 748 852 - -
Alju01g2335 1342 Gene3D - 1089 1173 - -
Alju01g2335 1342 Gene3D - 1222 1306 - -
Alju01g2335 1342 SMART ultradead3 304 493 IPR014001 -
Alju01g2335 1342 SMART helicmild6 600 706 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2335 Alju-ChrAlju01 20920394 20932653 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g2335 01 20920394 20932653 Alju01g2335 01 20920394 20932653 ECH