Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1951 ATGGCAATCCGGGACTACATTTCTAACATTTCGAAAGCCGTCTACGCGACCATGAGTTCGGCTGGATCGACCAAAGGTGGAAGGGGTAAGGCGAAATCCTCTAAATCTGTTTCTAGGTCTCAGAAGGCTGGTCTTCAATTTCCCGTTGGTCGTATCGCTCGCTTTCTCAAGGCCGGAAAGTATGCCGAACGTGTTGGTGCCGGTGCTCCAGTCTATCTCTCTGCCGTATTGGAATATCTTGCTGCTGAGGTTCTTGAGCTTGCTGGCAATGCTGCTAGAGATAACAAGAGGAATCGCATTGTTCCAAGGCATATTCAGCTTGCTGTACGTAATGACGAGGAGTTAAGTAAGCTCTTAGGATGTGTCACTATTGCCAATGGTGGTGTTTTGCCAAATATTCATCAAAATCTCCTGCCAAAGTCGATGGGGAAGGGAAAAGGCGATATTGGATCAGCATCCCAAGAATTCTAA 471 0.4713 MAIRDYISNISKAVYATMSSAGSTKGGRGKAKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKRNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQNLLPKSMGKGKGDIGSASQEF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1951 156 ProSitePatterns Histone H2A signature. 43 49 IPR032458 -
Alju01g1951 156 Pfam C-terminus of histone H2A 113 146 IPR032454 -
Alju01g1951 156 CDD H2A 25 140 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 SMART h2a4 24 144 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 SUPERFAMILY Histone-fold 27 144 IPR009072 GO:0046982
Alju01g1951 156 FunFam Histone H2A 23 148 - -
Alju01g1951 156 Pfam Core histone H2A/H2B/H3/H4 23 110 IPR007125 GO:0003677
Alju01g1951 156 PANTHER HISTONE H2A 28 140 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 PRINTS Histone H2A signature 64 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 PRINTS Histone H2A signature 93 107 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 PRINTS Histone H2A signature 79 92 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 PRINTS Histone H2A signature 121 139 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 PRINTS Histone H2A signature 35 57 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju01g1951 156 MobiDBLite consensus disorder prediction 20 39 - -
Alju01g1951 156 Gene3D Histone, subunit A 18 148 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1951 Alju-ChrAlju01 16135868 16137465 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1951 01 16135868 16137465 Alju01g1951 01 16135868 16137465 ECH