Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1866 ATGGAAGAGGGGGAAGCCAACAAAGAAATCGAAGTTGCTCCAGCACTGATTGCAGTTCACCCATCCCAGAAATCTGTTGCCGCTGCCGTTGGACCAACCTTACGTGTATTCGACCTTCATGCTGGTTCCGTGGCTTCATTGATTGATGACTCCAGCGTCCCTTTTCATAGAGATTCTATTAGAGCTGTTCGATTTGGTTCAAAAGGGAGGCTCTTGGTATCCGCAGGCGATGACAAAACTGTCAAGATATGGTCAACTAAAAATTGGCGCTGCATTTGTACTGTGTCCTCAGAAAAGAGAGTTAGTGCAGTCGCTATAAGCAATGATGGTTCTTATGTGTGTTTCGCTGACAAATTCGGTGTTGTCTGGGTTGTGGATCTGGTTGGATGTGATGGCGATCAACCAATAGTTGATAAGAAGGCAACCCCGCTTCTTTCTCATTATTGTAGTATCATCACTAATTTGGAATTTTCACCTGATGGTCGATTCATTGTTAGTGCTGATCGGGATTTCAAAATTCGTGTTACTATTTTTCCCAACAAGCCTTTAAGTGGAGCTCATGAGATACATAGCTTCTGTCTTGGTCATACAGAGTTTGTTTCCTGCATTGCCTTTATTCATGATCAGGATTGCCCTCAAGGCCTTCTCATATCTGGTGGTGGTGATTCAACAGTCCGTTTGTGGGACCCTTCATCTGGAGCTCTCCTAGATACCTGTGAGGTTGCAGTTAAGGCAGGAGTTACAGAGTCTAATGATGAAGCAGAGGACCATGCCTATGCCGTGACTGACTTATGCACTATCATGGATGGATCGCTTGTTGCAGTGGCCCTTCAGAGCTTGCATGGAATAATATTGCTGAAGTGCAACCTTTCTGCTCGAACACTTTTGGTTGCCAAGGTTATCTCTATTGCAGGAGAGGCGTTTGTCCCTACTTGCTTGGGAACCAGCTCCTGTACTGGGATATTGTGGATGATAACAGGTGTGTCTAGTCTACCGGGTTCTAGTTATCCGGCTGTGGCACGTGTTCGAGCAATTTCTGGTTTCGGTGGTGATCAAGACCCAGCGGTTGTTGAAGATGACAAGATCCCTGGGGGAGAGAAGTTGCTGGAAACTTTACAGGGGAGCACATCTGTTGATGAGAAGGCTTTCTTGGATGCTGCTGAAGCCGTCAAGACTGCAATGTGCAATCTATTGATTAAAAAGCAATACTCTACAGAGAATAGAGAAACTAGGAAGAGGACCAGAAACGATAGAAAATTAAAAACGCAACAGAGTTAA 1278 0.4507 MEEGEANKEIEVAPALIAVHPSQKSVAAAVGPTLRVFDLHAGSVASLIDDSSVPFHRDSIRAVRFGSKGRLLVSAGDDKTVKIWSTKNWRCICTVSSEKRVSAVAISNDGSYVCFADKFGVVWVVDLVGCDGDQPIVDKKATPLLSHYCSIITNLEFSPDGRFIVSADRDFKIRVTIFPNKPLSGAHEIHSFCLGHTEFVSCIAFIHDQDCPQGLLISGGGDSTVRLWDPSSGALLDTCEVAVKAGVTESNDEAEDHAYAVTDLCTIMDGSLVAVALQSLHGIILLKCNLSARTLLVAKVISIAGEAFVPTCLGTSSCTGILWMITGVSSLPGSSYPAVARVRAISGFGGDQDPAVVEDDKIPGGEKLLETLQGSTSVDEKAFLDAAEAVKTAMCNLLIKKQYSTENRETRKRTRNDRKLKTQQS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1866 425 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 414 IPR028884 GO:0036265
Alju01g1866 425 Gene3D - 99 319 IPR015943 GO:0005515
Alju01g1866 425 SMART WD40_4 138 177 IPR001680 GO:0005515
Alju01g1866 425 SMART WD40_4 185 229 IPR001680 GO:0005515
Alju01g1866 425 SMART WD40_4 46 85 IPR001680 GO:0005515
Alju01g1866 425 SMART WD40_4 88 126 IPR001680 GO:0005515
Alju01g1866 425 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 356 - -
Alju01g1866 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 229 - -
Alju01g1866 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Alju01g1866 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
Alju01g1866 425 Pfam WD domain, G-beta repeat 55 85 IPR001680 GO:0005515
Alju01g1866 425 Pfam WD domain, G-beta repeat 189 229 IPR001680 GO:0005515
Alju01g1866 425 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
Alju01g1866 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Alju01g1866 425 PANTHER WD40 REPEAT PROTEIN 4 13 416 IPR028884 GO:0036265
Alju01g1866 425 Gene3D - 15 98 IPR015943 GO:0005515
Alju01g1866 425 MobiDBLite consensus disorder prediction 406 425 - -
Alju01g1866 425 SUPERFAMILY WD40 repeat-like 16 278 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1866 56 236 Miscellaneous Gene Families AT5G08390 24.457 1.58e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1866 01 15235916 15238984 Alju01g1866 01 15235916 15238984 ECH