Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1861 ATGACACTCAATAGCTCTTCCTCTTCTCTCCATCGTGTGACTCTTCTCGTCCTCCTCACTGTATTGGTCACTCCTCTATCGAAGATAACTGTTGTGCAAAAACTGAGAATTGAGCCAGCAAATGAAAAAGAAAACATATTGAAGCACAATGATGGGCATTTGAGGTTGCCCGCTTTTTGTGATTGTGAATATAGCCGCTCAAATTCTTCCTCTACCTTTTCTGGTGATTTAAAGGGCCGTCCTAATATGGGTTGGAAAGCAGCTGAGAAACTAATTAGGCACTGGAAGATTCTCAGAGGGGAAAATGTAATGATTATATGGGGCATGGAAAGAGGCAAGATAGGGATTATTAAGCGCATGATTCACTCTCGGAATCGTGCGATTGTTGAGGCCGAAAATATGAATGAATTCAGCCACCGAGGTCTATATTTCTCAAGTATGCCTGAAACAATCCTGGTCCAGGCTCGAGACCCTGCTAAACTGAATATGGAAATAGAAAATGCTATCAATGAGAATAAATTAGATGATACATGGAAGCTATTTGAGCAGCATATGCAAATGGATGGCTTTCCTAGAAAATTTATTCTCAACAAGCTTCTAACCACTTTTGTGGAAAGCCTCGATATACAATGGCTAGAAAAAGCTTATGGGTTAGTAGAAAAGGCTATTGAGGAAGGCAAACAGAACTTGTTAGAGAAGGAAGTACTTATGTATCTCTGTTTTGGTCTTGCCAAAGCTGGATTACCAGTTCCCGCATCAACTGTCTTAAGAAAGATGATAAATATGGAGCAATTTCCCCCAGTCACTGCATGGTCTGCAGTGTTGGCCCACATGTCACAAACAGCAGATGGAAGTTATCTTGCTGCTGAGTTGATTCTTGAAATAAGTTATTTGTTTCAGAACAATAGAGTGGATCCACGCAAAAAGAGCAATTCACCTTTGGTAGCTATGAAGCCTGATACTACTGCTTTTAACATTGCTTTGGCAGGGTGTCTCCTATTTGAGACTACAAGGAAAGCAGAGCAGCTTCTAGATATGATGCCTCGAATTGGTGTCAAGGCTGATGTAAACTTACTAATAATAATGTCACATGTATATGAGAAGAATGGGCGAAGAGAAGAGCTTAAGAAGCTGCGAAGGCACATAGAGGAAGCACCCAATCTTACTGATATTCAGTTCCGCCAATTCTTTAATTGTTTGCTCTCATGCCATTTAAAATTTGGGGATCTAGATTCAATATCAAGTATGGTTTTGGAAATGCTAAGGAAGTTAAAGGAGGCAAAAAATTCTCTTGCAGCTGCTAAATTTATAAGTGACTCAACTGAAGTTAGTTATAAATATTCTCCTGGACTTGCTTCTATGCGAAGTTTGAGTGATGGTAAGGATTCAGACTATTTAGAATCTGACAAACCAATGAGAAACACTATCCTATCTTATGAAGAGTTCTTTGGAGATCGGAATTTCTTGAAAATTGAAGCAGAGTCAAAGGCTGTTCTTGGTTCTTTATTAGCCAAGTTGCAGACACAGGTTGACTTGATTACAACAAAACATGGTATACTCCAACCAACTGAATCAATTTATGTGAAACTGGTTAAAGCTTTTCTAGAAGTTGGCAAGACCAAGGATTTGGCAGAGTTTCTAATCAATGCAGAAAGAGAAGATTCTCCGCTTTCCAATGATAGTTCAATATTAGTTCATGTCATTAATTCATGTATTGCACTTGGATGGTTGGATCAAGCACATGACCTTCTTGATGAGATGCGGATAGCTGGAATAAAAACTGGCTCATCTGTGTATGCCTCTCTCTTGAAAGCCTATTGTCAAGCAAATAAGGCTGCAGAAGTCACTTCACTTTTAAGAGATGCAAGGAAGGATGGTATCCAGCTGGACTCTAGTTCTTATGAGGCGATGATCCAATCCAGGGTGCTTCAGGAGGATACAAAGGGAGCGCTCTCTTTATTCAAAGAGATGAAAGTGGCGAAAATTCCAAAAGTTGGACAGCAAGACTCTATCATGCAAACTAAAAGTCATGCACAGAAAGATGAATCTGGTTTGATGATGAATCTGTTGCAGGAAATCAAAGAAGGACAGAAAGTGGATTATGGGGTTCATGACTGGAATAATGTAATCCATTTTTTCTGTAAGAAGAGACTGATGAAAGATGCTGAAAAGGCTCTGAAGAAGATGAGGAGCCTAAGCCACACACCAAATGCACAAACCTTCCATTCTATGGTCACTGGGTATGCTGCTATTGGAGGGAACTATCTGGAGGTAACAGAGCTCTGGGGTGAGATGAAATCTCTTGCTTCTTCGGTCTCAATGAAGTTTGATCAGGAGCTTCTTGATTCAGTGCTGTATACCTTTGTGAGGGGTGGATTCTTCAGCCGAGCCAATGAAGTTGTGGCAATGATGGAAAAAGCGAACATGTTTATTGACAAGTACAAGTATCGGATGCTTTTCTTGAAGTATCATAAAACATTATATAAAGGCAAGGCTCCGAAGATTCAGACAGTAGCCCAGTTAAACAAGAGGGATGCAGCCCTGGCTTTTAAAAAATGGGTTGGCTTGAGTTAA 2574 0.4013 MTLNSSSSSLHRVTLLVLLTVLVTPLSKITVVQKLRIEPANEKENILKHNDGHLRLPAFCDCEYSRSNSSSTFSGDLKGRPNMGWKAAEKLIRHWKILRGENVMIIWGMERGKIGIIKRMIHSRNRAIVEAENMNEFSHRGLYFSSMPETILVQARDPAKLNMEIENAINENKLDDTWKLFEQHMQMDGFPRKFILNKLLTTFVESLDIQWLEKAYGLVEKAIEEGKQNLLEKEVLMYLCFGLAKAGLPVPASTVLRKMINMEQFPPVTAWSAVLAHMSQTADGSYLAAELILEISYLFQNNRVDPRKKSNSPLVAMKPDTTAFNIALAGCLLFETTRKAEQLLDMMPRIGVKADVNLLIIMSHVYEKNGRREELKKLRRHIEEAPNLTDIQFRQFFNCLLSCHLKFGDLDSISSMVLEMLRKLKEAKNSLAAAKFISDSTEVSYKYSPGLASMRSLSDGKDSDYLESDKPMRNTILSYEEFFGDRNFLKIEAESKAVLGSLLAKLQTQVDLITTKHGILQPTESIYVKLVKAFLEVGKTKDLAEFLINAEREDSPLSNDSSILVHVINSCIALGWLDQAHDLLDEMRIAGIKTGSSVYASLLKAYCQANKAAEVTSLLRDARKDGIQLDSSSYEAMIQSRVLQEDTKGALSLFKEMKVAKIPKVGQQDSIMQTKSHAQKDESGLMMNLLQEIKEGQKVDYGVHDWNNVIHFFCKKRLMKDAEKALKKMRSLSHTPNAQTFHSMVTGYAAIGGNYLEVTELWGEMKSLASSVSMKFDQELLDSVLYTFVRGGFFSRANEVVAMMEKANMFIDKYKYRMLFLKYHKTLYKGKAPKIQTVAQLNKRDAALAFKKWVGLS 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1861 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Alju01g1861 857 SUPERFAMILY Translation proteins SH3-like domain 92 139 IPR008991 -
Alju01g1861 857 Pfam Pentatricopeptide repeat domain 617 662 IPR002885 -
Alju01g1861 857 Pfam PPR repeat 567 592 IPR002885 -
Alju01g1861 857 Pfam PPR repeat 397 423 IPR002885 -
Alju01g1861 857 PANTHER BNAC05G43320D PROTEIN 139 857 - -
Alju01g1861 857 Coils Coil 715 735 - -
Alju01g1861 857 Gene3D Tetratricopeptide repeat domain 243 450 IPR011990 GO:0005515
Alju01g1861 857 Gene3D Tetratricopeptide repeat domain 671 849 IPR011990 GO:0005515
Alju01g1861 857 Gene3D - 86 151 IPR014722 -
Alju01g1861 857 CDD KOW_RPL26 100 134 IPR041988 GO:0003723
Alju01g1861 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 702 736 IPR002885 -
Alju01g1861 857 NCBIfam pentatricopeptide repeat 706 738 IPR002885 -
Alju01g1861 857 Gene3D Tetratricopeptide repeat domain 554 670 IPR011990 GO:0005515
Alju01g1861 857 Pfam PPR repeat family 704 749 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1861 Alju-ChrAlju01 15200334 15205417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1861 563 819 Miscellaneous Gene Families AT4G11690 20.623 3.71e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1861 01 15200334 15205417 Alju01g1861 01 15200334 15205417 ECH