Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1677 ATGGAGGACGAGGCTGATATATACGATGGTGTTAGAGCTCAGTTCCCTCTTAGTTTTGGAAAGCAGTCCAAGTCGCAAACCCCTCTTGAAGCCATCCACAATGCCACTCGTCGTTCCAGTTCCAATCTCAGCTCTAATCCCTCTTCTTCTTCTTCTTCGAATCCCTCTGCCACGGCCACCGGCATCAAAGGTACCAATGACCCCCCTTCTATGTCCTCCTCTTCCAAGGCTTGGCTTCGTTCCCTCCGCAACTCCAAAAACCCTAACCATGATGCTACCGCCGATCGTGGTGGTGGTGCTTCCACCATTGGGCCGCCTCGGCCACCTCTACCGGTGGAATCTGATGAGGACGGCGGTGTTATGGTGGGACCTCCTCGGCTGCCGGTGGAAGAAGATGATGATGGTGCGATGATTGGGCCTCCTCCACCGCCTGTTGGTTTAGGTTCCGGTGAAGAAGGGGATGACGATGGGGGTATGATTGGCCCGCCAAGACCTCCCCATTTGGGTGCGTCAAGTGCTGAGGATGATTCAGATGAAGACGAGGTGGGGAATCGCTTTCGTATTCCCCTTAGCAACGAGATTGTTCTCAAGGGCCACACTAAGGTTGTGTCGGCTCTTGCTGTGGATCACACTGGGTCTAGAGTACTTTCTGGAAGTTATGACTATACGGTGCGCATGTATGACTTTCAAGGAATGAATTCGCGGTTGCAATCATTTCGACAATTGGAGCCATTTGAAGGTCATCAAGTTCGCAACCTAAGCTGGAGTCCAAGTGCAGATCGCTTTCTGTGTGTGACAGGATCAGCTCAAGCAAAGATCTATGACCGGGATGGGCTAACTCTGGGAGAGTTTGTAAAGGGGGACATGTATATCCGTGATCTAAAAAATACTAAAGGCCACATATCTGGATTGACATGGGGAGAATGGCACCCAAAAACCAAGGAAACAATTTTAACATCATCAGAGGATGGATCGCTTCGTATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGAAGGCAAATGCATTGTTGGTGGTATAGGAGACGGTTCTATACAGATTTGGAGTATTAAGCCTGGATGGGGAAGTAGGCCAGATGTATATATTGACAAAGGGCATTCTGAAGATATTACTGGTCTGAAATTTTCTAGTGATGGGAGAGTTTTACTGTCAAGAAGCTTTGATGGTTCATTGAAGGTCTGGGATTTGCGCAAAATAAAGGAACCTCTAAAGGAATTTGAAGATCTTCTGAATAATTACGGGCAAACAAATATCGCTTTTAGCCCTGATGAACAACTTTTTTTTACTGGAACATCCTTTGAAAGGGAGAGTTCAAGTGGAGGTTCATTGTGCTTTTATGATCGGACAAACCTTGAGCTTGTTTCAAGAGTTGGTATATCGCCCACTTGTAGTGTTGTGCAATGTGATTGGCATCCAAAACTAAATCAGATCTTTGCAACGGTTGGTGACAAAAGCCAAGGAGGAACTCACATACTATATGATCCAACCCTGAGCGAGAAAGGAGCTCTTGTTTGCGTTGCACGTGCACCAAGGAAAAAATCTGTTGATGATTTTGAGGCAAAACCAGTTGTTCACAATCCTCATGCCTTGCCACTATTTAGAGATCAGCCAAGCCGTAAACGTCAGCGAGAGAAAATACTAAAGGATCCAATGAAGTCCCATAAGCCTGAACTTCCCATAACAGGGCCTGGTTTTGGTGGGCGAGTTGGTGCAAGTCAAGGAAGCCTGCTGACTCAATATCTTATGAAGCAAGGGGGTATGATTAAGGAGACATGGATGGAGGAAGATCCAAGAGAAGCTATCCTGAAATATGCTGATGTTGCAGCAAAAGATCCGAAATTCATTGCTCCCGCATATGCACAAACCCAGCCTGAGCCTGTTTTTCAAACTTCAGATTCTGATGAGGAAGAGAAACAATAG 2007 0.4644 MEDEADIYDGVRAQFPLSFGKQSKSQTPLEAIHNATRRSSSNLSSNPSSSSSSNPSATATGIKGTNDPPSMSSSSKAWLRSLRNSKNPNHDATADRGGGASTIGPPRPPLPVESDEDGGVMVGPPRLPVEEDDDGAMIGPPPPPVGLGSGEEGDDDGGMIGPPRPPHLGASSAEDDSDEDEVGNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTWGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDREGKCIVGGIGDGSIQIWSIKPGWGSRPDVYIDKGHSEDITGLKFSSDGRVLLSRSFDGSLKVWDLRKIKEPLKEFEDLLNNYGQTNIAFSPDEQLFFTGTSFERESSSGGSLCFYDRTNLELVSRVGISPTCSVVQCDWHPKLNQIFATVGDKSQGGTHILYDPTLSEKGALVCVARAPRKKSVDDFEAKPVVHNPHALPLFRDQPSRKRQREKILKDPMKSHKPELPITGPGFGGRVGASQGSLLTQYLMKQGGMIKETWMEEDPREAILKYADVAAKDPKFIAPAYAQTQPEPVFQTSDSDEEEKQ 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1677 668 CDD WD40 195 514 - -
Alju01g1677 668 Pfam WD domain, G-beta repeat 352 378 IPR001680 GO:0005515
Alju01g1677 668 Pfam WD domain, G-beta repeat 194 228 IPR001680 GO:0005515
Alju01g1677 668 Pfam WD domain, G-beta repeat 295 330 IPR001680 GO:0005515
Alju01g1677 668 Pfam WD domain, G-beta repeat 393 424 IPR001680 GO:0005515
Alju01g1677 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 339 IPR001680 GO:0005515
Alju01g1677 668 MobiDBLite consensus disorder prediction 647 668 - -
Alju01g1677 668 FunFam WD repeat-containing protein 70 285 527 - -
Alju01g1677 668 Gene3D - 167 284 IPR015943 GO:0005515
Alju01g1677 668 Gene3D - 285 525 IPR015943 GO:0005515
Alju01g1677 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 332 - -
Alju01g1677 668 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 132 667 - -
Alju01g1677 668 SUPERFAMILY WD40 repeat-like 180 512 IPR036322 GO:0005515
Alju01g1677 668 MobiDBLite consensus disorder prediction 1 181 - -
Alju01g1677 668 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Alju01g1677 668 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Alju01g1677 668 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Alju01g1677 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 426 - -
Alju01g1677 668 MobiDBLite consensus disorder prediction 18 88 - -
Alju01g1677 668 FunFam Nucleotide binding protein 140 284 - -
Alju01g1677 668 SMART WD40_4 385 424 IPR001680 GO:0005515
Alju01g1677 668 SMART WD40_4 189 228 IPR001680 GO:0005515
Alju01g1677 668 SMART WD40_4 334 378 IPR001680 GO:0005515
Alju01g1677 668 SMART WD40_4 287 330 IPR001680 GO:0005515
Alju01g1677 668 SMART WD40_4 238 275 IPR001680 GO:0005515
Alju01g1677 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 230 - -
Alju01g1677 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Alju01g1677 668 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Alju01g1677 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 426 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1677 324 491 Miscellaneous Gene Families AT5G08390 26.036 2.19e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1677 01 13429407 13432832 Alju01g1677 01 13429407 13432832 ECH