Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1668 ATGAACTCTGCCTCTTTCTTCTGTTTTGAATTATCGTCCGTCTTGCCTCACTGGAAATCTTCCCTTGTTCATGGGTATCTCCCGTTTCGGCTTTCACCCACACATGGGTTAGTTTATCTGGGTTCTATTGTCATGGATTCTTCTTTCAGTTCATGTTCTGGGTTCCGTCCTTCATATTCTTCTCTATCTTCGGCGCTTCTGCCTTTTATTTTTTCTAATTCTATGCTTTTAAATTTGACTTCTTTGTTTGGGAAGTCCAAAGTCTCTGGCTTTCCTGTTAAGTTGGACGTGCTGAAGTTTCACCGCATCCTATTAATGGAGAATTCATCTGATGCGCTTGGCTCAAAAGGCTTGATTAAAAAAGCTGAATTTGTGAGGATAATCATTCAGTGCTTATATGCATTAGGGTATAGTAAGTCTGCATCATGCTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGCAGAATTTCAGTTGCTTGAATCACAAATACTTAATGGGGATTGGGATGGTTGCGTCGGCACTCTTAATTTACTAAAGGATATGATTGATGAAACTAGAGAATCCGCTCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATTTGAGTTGTGGCCAAGATATTTTAGCTTTGAATGTATTAAGGAAACAGGTCGCCACATTACATGTGGACAAATGCAAAGTTCACAGCCTTGCCAATAGCTTGCTTTCCTTGAAGGATACAGAGTTAGGTTTAATAGATGATACCAATGCCCATGACTTGCGAAGAAAGTTGTTAACTGACTTGGAGAAATTGCTCCCTCCTCCAATTACAGTACCTGAAAGAAGGCTGGAGCATTTAGTAGAAACTACTCTTACTTCCTGGATTGATTCTTGTATGTATCATTGTTCATCAAGTCCAATTTCACTTTATGAGGACCATTGTTGTAGCCGGGATCTCATTCCTACCAAAACCACTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTTGTGCAATTTTCTAATAATGGGGAGTACCTTGCCTCTTCATCTAATGATTGTACAGCAATCATATGGAAGGTGCTAGAAGATGGGAAACTGACACTGAAACACACACTACAAGGTCACCAAAATCCGGTATCTTTTGTGGCATGGAGTCCTGATGACACTAAGTTGCTCACATGTGGGAATGCAGAAGTCTTGAAGCTGTGGGATGTTGAAACAGGTACTTGCAAGCACACATTTGGGAGTCATGGCTTTGTTGTGAGCTCATGTGCCTGGTTTCCCAACTCAAAGAATATTGTGTGTGGCAGCTCCGACCCTGAAAAGGGCATCTGCATGTGGGATTGTGATGGAAACGAGCTAAAGGCTTGGAGAGGAGCTAGGATGCCCAAAGTTCTAGACCTTGCTGTTACATCAGATGGGGAGTACCTTATCACCATATTCATGGAAAAAGAGATTCGGATTTTGCATCTGGGAACAAATACAGAACGAGTCATCTCAGAGGAGCACCCGATCACATCCCTTTCAGTTTCCGGAGATGGCAAGTTCTTCATTGTCAACCTAAACAGCCAGGAGATACATATGTGGGATGTTGATGGGAAATGGGACAAGCCATTGAGGTACCAGGGTCATAAGCAACACAAATATGTGATAAGATCATGCTTTGGTGGATTGAATAGCACATTCATTGCCAGTGGTAGTGAGAATTCACAGGTCTACATTTGGAACCGGAGGAACTCAAAGCCAATAGAGGTTTTATCGGGGCACACACTGACTGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGCTGTCATCTGCAAGTGATGATTATACAATTCGTATATGGGGACCCAGCTTATTGAAAAAAGAATGA 1869 0.4184 MNSASFFCFELSSVLPHWKSSLVHGYLPFRLSPTHGLVYLGSIVMDSSFSSCSGFRPSYSSLSSALLPFIFSNSMLLNLTSLFGKSKVSGFPVKLDVLKFHRILLMENSSDALGSKGLIKKAEFVRIIIQCLYALGYSKSASCLELESGISFKSAEFQLLESQILNGDWDGCVGTLNLLKDMIDETRESALFLVFRQCLLEYLSCGQDILALNVLRKQVATLHVDKCKVHSLANSLLSLKDTELGLIDDTNAHDLRRKLLTDLEKLLPPPITVPERRLEHLVETTLTSWIDSCMYHCSSSPISLYEDHCCSRDLIPTKTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGKLTLKHTLQGHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGTCKHTFGSHGFVVSSCAWFPNSKNIVCGSSDPEKGICMWDCDGNELKAWRGARMPKVLDLAVTSDGEYLITIFMEKEIRILHLGTNTERVISEEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPLRYQGHKQHKYVIRSCFGGLNSTFIASGSENSQVYIWNRRNSKPIEVLSGHTLTVNCVSWNPRRPQMLSSASDDYTIRIWGPSLLKKE 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1668 622 ProSiteProfiles LIS1 homology (LisH) motif profile. 120 152 IPR006594 GO:0005515
Alju01g1668 622 PANTHER WD REPEAT PROTEIN 26-RELATED 107 617 - -
Alju01g1668 622 Gene3D - 314 616 IPR015943 GO:0005515
Alju01g1668 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 622 - -
Alju01g1668 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 614 IPR001680 GO:0005515
Alju01g1668 622 FunFam WD repeat-containing protein 26 homolog 310 615 - -
Alju01g1668 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 356 - -
Alju01g1668 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 356 IPR001680 GO:0005515
Alju01g1668 622 SMART Lish 120 152 IPR006594 GO:0005515
Alju01g1668 622 SMART WD40_4 446 486 IPR001680 GO:0005515
Alju01g1668 622 SMART WD40_4 575 615 IPR001680 GO:0005515
Alju01g1668 622 SMART WD40_4 403 444 IPR001680 GO:0005515
Alju01g1668 622 SMART WD40_4 361 400 IPR001680 GO:0005515
Alju01g1668 622 SMART WD40_4 488 526 IPR001680 GO:0005515
Alju01g1668 622 SMART WD40_4 316 355 IPR001680 GO:0005515
Alju01g1668 622 SMART WD40_4 530 572 IPR001680 GO:0005515
Alju01g1668 622 SUPERFAMILY WD40 repeat-like 313 614 IPR036322 GO:0005515
Alju01g1668 622 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 153 210 IPR006595 -
Alju01g1668 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 404 - -
Alju01g1668 622 Pfam WD domain, G-beta repeat 404 443 IPR001680 GO:0005515
Alju01g1668 622 Pfam WD domain, G-beta repeat 577 614 IPR001680 GO:0005515
Alju01g1668 622 Pfam WD domain, G-beta repeat 319 355 IPR001680 GO:0005515
Alju01g1668 622 Pfam WD domain, G-beta repeat 364 400 IPR001680 GO:0005515
Alju01g1668 622 Pfam WD domain, G-beta repeat 537 572 IPR001680 GO:0005515
Alju01g1668 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 409 IPR001680 GO:0005515
Alju01g1668 622 CDD WD40 320 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1668 Alju-ChrAlju01 13388680 13391934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1668 287 479 Miscellaneous Gene Families AT5G08390 28.718 1.02e-15 79.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1668 01 13388680 13391934 Alju01g1668 01 13388680 13391934 ECH