LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g1431	ATGGACGGATCTCGGAAACACCAGGTGTCCTTGAGAGGAGCTAGCGCAAAGGAGATAACAAGGGATGCCCTACTTGAGAAGGTTTCCCGGGAAAGAGAACTTCGCAATTATGCAAAACGGGCTACTGCTTCTGCTCTATTTATTCAGGGAGTATGGAGGCGCTACAAGGTTACAAGGATGGTTGCTCAGCAACTTCAGCAGGAGTGGGAGACGTTGGTGAACCACTACAATGGTGTTCCGACAGCAATGTGGATTGCTAACAATTTGTTGCGACCATTTCTTTTCTTTATAGGCCGGTTCTCATCTGAGCATCAGAGGGTTCACAGCAAGAAAGTAGACTCTATGAGGATTTGCTTTACAATCCTATTGGAAAGCCTGAACTCTTCTGATCCAAAGAGGAACTTCTGTTCTCTAGCAGTTGGTACACCTGAAGAAAGGAGAATTTGGGGTCACCAAGCTCGAGGGCTGATTTCTGTTGGCTTTGTCATTCTTTCAGAGTTTAGTAAAGGCATTTCGAGAAATCAAGATATTACCTTGGTTACCTCCCTTGCAATGCGTGTTCTTGTTATGTTAACTGATCTGAAAGGATGGAAAGGCATTACTGATGACAATCGTCAAGATGCTGATATAGCAGTGAAAGGTTTGATTGAGTACATGGGGAGTAATTCCAGTGGTAGCTATGTGTCTATCAGTAGATATATTAATTCATTGGATAACTGTTCTTCACAAACAAAGAATATTAACCAGACAGATGATAAGTTTTTAATTACTGCTAGTACAATAACTTTGGCTTTGCGGCCATTCTATTTGAGAAGCTCTGATGTCAATGTCCCTGCTATGTTGGATGTGGACCATGCTGCTAGGCTGTATTGTGTATACATGCTGACAATTCCTTGGCTTGTGAAGCGTTTGCCACCTCTTCTTCGACCTGCTATAAAGCACAATTCTATTTTGTTCCCATGCTTTCTTGGCATATTGATTTTGAGAGAGAATATTTCGATGGAGATATCACATTTGATTCATTTAGATACTCTTATCTCTTCCAAGCCAATTCCATCAGTTGGTTGGGTTCTTACTAACATTATCTGCCTAGCAATGGGGAATGAAAATGAATCTGTGGATCCTCAATGCTTCCATCAAGGTTTAGACCATGCATTATATGTGCATGTTGTTAACTATCTTGCAGAAACCTTACTGTCTCATCTTTATAATGTTGGATGGATTAAAAGGGGGAAGAAAGCTATTCAGAATGATGTTGAAGTGTCAGCAGAACCCATGGATATAGTTCTTTATGAGAATGAAGAAGCATACGATTCCTTACTGATTTCTTACATAGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTTCAAAATCTTTTGGCGGCAGCAAACAAAGATGCCACTGACAGGGCTGGGATTCTACTTCCAAATGGTCTGGAATGCTTGGGAAAGCTGAATTTAAGTGATATTGCTCTTTTTTATTCGAACATGCTAAAAGTTTATTCAATCTTGAATCCAGTTCGTGGCTCCTTGCCAGTTCTCAACATGCTATCCTTTACTCCTGGATTTCTTGTCAAGGTGTGGAATGTACTGGAGGATTCCATTTTTCATGGAGACACTCACACTTCTGATTACCACATGAGTGGAAAAACCAAACATGGTGCATCTGAGAGCAGGCTAAAACGTGTCAGTAAGGATGGGGCTAATAAGTGGGTCAGTGTTCTTCATAAATTAACTGGCAAGTCCCATGCTGCAATGAATAATGCTGAACCCACCAGCAGTCATACTGAGCCTAGCCAAGCGAATGAGGATTCATCTGATGTATGGGACATAGAGCCTATGAGGCGTGGTCCACAAGGCATTTCTAAAGATACATATGCTCTACTTCATATATTCTGTGCCACCTATTCTCACCTACTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAAGAGGTTCCATTCAAATTAGAGAAGCAACGAAGAATTGCATCAATGCTCAATACTCTGGTGTATAATGGCTTGTCCCATGGTATTAGTGAGCAGAATAGATCCCTCATGAACAGTGCTATCAGATGCTTACATTTAATGTATGAAAGGAATTGTCGGCATCAATTTTGTCCTCCTGAATTGTGGCTTTCCCCTGCTAGAAAAAGCCGGCCTCCTGTTGCAATGGCTGCCAGAACTCATGAAATTTCATCAGTCAATATAAGATATGATGATTCATTGACTGTCCCTAGTATGGGTTCTGTTATCACCACAACTCCTCATATTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGAGAGTTCATTAAGATGGATAAAGCCTCCCGAAAAATGGCTGGGGAAATTTCTGAACCTGGTTCACGAGCTATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGTCAACTAAATTCCCTTGGGACAAGGCTGAAGTCATCCATCCACGTATCTTTTGTGAGTGAATGTGGCCTTCCTGAGGCTGGCCTGGATTATGGCGGGTTATCTAAAGAATTTTTAACTGACATATCAAAAGCGGCCTTTGCCCCAGAATATGGGCTATTTTCCCAAACCTCAACCTCCGACAGGCTTCTAATACCAAATTCTTCTGCAAGATTTTTGGATAATGGTCTTCAGATGATTGAGTTTCTTGGAAGAGTTGTCGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCTTTCTCACACGTGTTTGTACAAAAATTATTGGGGAGATATAGCTTTCTTGACGAGTTATCAACACTTGATCCAGAGTTATACAGGAATCTTATGTATGTCAAGCATTATGATGGTGATGTCAAGGACCTCTCTCTTGATTTTACTGTTACTGAAGAATCATTTGGGAAATGGCATGTTGTTGAGCTAAGGTCTGGTGGCAAAGATATCCTGGTGACGAATGAGAATAAAATGCAGTACATACATGCAATGGCAGACTACAAACTTAATCAACAGATATTGCCTTTCTCAAATGCATTCTATACAGGATTGACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCAAGTGAATTTAATCAGTTGCTTTCAGGTGGAAAGTACGATATTGATATTGATGATTTAAAAAATAACACACGATACACAGGTGGTTATAATGAAGGAAGCCGGACAATCAAGATATTTTGGGAGGTGATTAAAGACTTTGAACCCCAAGAACGATGCATGCTTCTCAAATTTGTCACTAGTTGTTCTCGTGCTCCATTGCTTGGGTTCAAATATTTGCAGCCAACTTTTACTATCCAAAAGGTTGCTAGTGATGTTCCTCTTTGGGCGACATTTGGAGGACAAGATGTTGAGCGGCTCCCTTCAGCTTCAACCTGTTACAATACCCTCAAGGCATTTACTATTCAAGGCATCTCTTGTCGCTTCCAACCTACAAACGTGCAAGTACTTTGA	3465	0.4066	MDGSRKHQVSLRGASAKEITRDALLEKVSRERELRNYAKRATASALFIQGVWRRYKVTRMVAQQLQQEWETLVNHYNGVPTAMWIANNLLRPFLFFIGRFSSEHQRVHSKKVDSMRICFTILLESLNSSDPKRNFCSLAVGTPEERRIWGHQARGLISVGFVILSEFSKGISRNQDITLVTSLAMRVLVMLTDLKGWKGITDDNRQDADIAVKGLIEYMGSNSSGSYVSISRYINSLDNCSSQTKNINQTDDKFLITASTITLALRPFYLRSSDVNVPAMLDVDHAARLYCVYMLTIPWLVKRLPPLLRPAIKHNSILFPCFLGILILRENISMEISHLIHLDTLISSKPIPSVGWVLTNIICLAMGNENESVDPQCFHQGLDHALYVHVVNYLAETLLSHLYNVGWIKRGKKAIQNDVEVSAEPMDIVLYENEEAYDSLLISYIDQFRPVCQQWHLQNLLAAANKDATDRAGILLPNGLECLGKLNLSDIALFYSNMLKVYSILNPVRGSLPVLNMLSFTPGFLVKVWNVLEDSIFHGDTHTSDYHMSGKTKHGASESRLKRVSKDGANKWVSVLHKLTGKSHAAMNNAEPTSSHTEPSQANEDSSDVWDIEPMRRGPQGISKDTYALLHIFCATYSHLLLVLDDIEFYEKEVPFKLEKQRRIASMLNTLVYNGLSHGISEQNRSLMNSAIRCLHLMYERNCRHQFCPPELWLSPARKSRPPVAMAARTHEISSVNIRYDDSLTVPSMGSVITTTPHIFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGTRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKAAFAPEYGLFSQTSTSDRLLIPNSSARFLDNGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKDLSLDFTVTEESFGKWHVVELRSGGKDILVTNENKMQYIHAMADYKLNQQILPFSNAFYTGLTDLISPSWLKLFNASEFNQLLSGGKYDIDIDDLKNNTRYTGGYNEGSRTIKIFWEVIKDFEPQERCMLLKFVTSCSRAPLLGFKYLQPTFTIQKVASDVPLWATFGGQDVERLPSASTCYNTLKAFTIQGISCRFQPTNVQVL	1154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g1431	1154	MobiDBLite	consensus disorder prediction	584	615	-	-
	Alju01g1431	1154	Gene3D	Hect, E3 ligase catalytic domains	796	1034	-	-
	Alju01g1431	1154	ProSiteProfiles	HECT domain profile.	818	1135	IPR000569	GO:0004842
	Alju01g1431	1154	FunFam	Putative Ubiquitin-protein ligase E3C	920	999	-	-
	Alju01g1431	1154	SMART	hect_3	812	1147	IPR000569	GO:0004842
	Alju01g1431	1154	SUPERFAMILY	Hect, E3 ligase catalytic domain	794	1135	IPR035983	GO:0004842
	Alju01g1431	1154	MobiDBLite	consensus disorder prediction	586	607	-	-
	Alju01g1431	1154	Pfam	HECT-domain (ubiquitin-transferase)	849	1136	IPR000569	GO:0004842
	Alju01g1431	1154	Gene3D	Hect, E3 ligase catalytic domain	920	999	-	-
	Alju01g1431	1154	CDD	HECTc	794	1135	IPR000569	GO:0004842
	Alju01g1431	1154	Gene3D	Hect, E3 ligase catalytic domain	1037	1140	-	-
	Alju01g1431	1154	PANTHER	UBIQUITIN-PROTEIN LIGASE E3C	6	1135	IPR044611	GO:0000209\|GO:0061630

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g1431	Alju-ChrAlju01	11356788	11366145	Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju01g1431	01	11356788	11366145	Alju01g1431	01	11356788	11366145	ECH