Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1090 ATGTCTGATGCATTTTGCTCCGACTGCAAGCGCCAGACCGAGGTTGTTTCCGATCACTCGGCTGGTGACACTGTTTGTTCTGAGTGTGGCCTCGTTCTAGAGTCCCATTCCATTGATGAGACATCCGAGTGGCGCACCTTCGCCAACGAGTCTGGCGATAATGACCCGGTCCGTGTCGGAGGACCCACCAACCCTCTTCTGGCCGATGGTGGCTTGTCGACGGTGATAGCCAAGCCCAACGGAGCCACCGGAGAGTTTCTTTCATCCTCCCTTGGTAGGTGGCAGAACCGCGGGTCGAACCCGGATCGGGGGCTGATTCTGGCTTTTAAAACTATTGCAACTTTGTCTGATAGGTTGGGACTTGTTGCAACTATTAAGGATCGAGCTAATGAGATATATAAGAGAGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAATTCAAACCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAATGAAGCAGCTGGGTTTGGAGAATACTCAGTCGTTGGAAATGGGAACAATACATGCTGGGGATTTTATGAGGCGATTTTGTTCTAATCTTGGTATGAACAATCAAGCTGTCAAAGCTGCTCAAGACGCAGTGCAGAAATCAGAAGAGTTTGATATAAGGAGGAGCCCCATATCTATTGCTGCGGCCGTTATATATATCATAACTCAACTTTCAGAGGATAAGAAGCCCCTAAAAGATATATCAGTTGCCACCGGAGTTGCGGAAGGAACCATTAGGAACTCCTACAAGGATCTTTATCCACATGTTTCAAAAATAATACCAACCTGGTACGCTAAGGAGGAGGATCTCAAGAGTCTCTGCAGCCCCTGA 939 0.4718 MSDAFCSDCKRQTEVVSDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGATGEFLSSSLGRWQNRGSNPDRGLILAFKTIATLSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEFKPRTVKEICSVANGATKKEIGRAKEYIMKQLGLENTQSLEMGTIHAGDFMRRFCSNLGMNNQAVKAAQDAVQKSEEFDIRRSPISIAAAVIYIITQLSEDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKSLCSP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1090 312 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Alju01g1090 312 Pfam Transcription factor TFIIB repeat 205 290 IPR013150 GO:0017025
Alju01g1090 312 CDD CYCLIN_TFIIB_rpt1 108 195 - -
Alju01g1090 312 SMART cyclin_7 211 290 IPR013763 -
Alju01g1090 312 SMART cyclin_7 110 192 IPR013763 -
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 212 230 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 244 260 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 PRINTS Transcription initiation factor IIB signature 276 290 IPR000812 GO:0006352|GO:0070897
Alju01g1090 312 FunFam Transcription initiation factor IIB 208 311 - -
Alju01g1090 312 Gene3D - 5 194 - -
Alju01g1090 312 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Alju01g1090 312 Gene3D - 208 311 - -
Alju01g1090 312 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Alju01g1090 312 SUPERFAMILY Cyclin-like 105 197 IPR036915 -
Alju01g1090 312 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Alju01g1090 312 FunFam transcription initiation factor IIB 91 197 - -
Alju01g1090 312 FunFam Transcription initiation factor IIB 5 193 - -
Alju01g1090 312 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Alju01g1090 312 SUPERFAMILY Cyclin-like 207 307 IPR036915 -
Alju01g1090 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 309 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1090 Alju-ChrAlju01 8339716 8343679 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1090 01 8339716 8343679 Alju03g2246 03 49442486 49445865 CCT
Alju01g1090 01 8339716 8343679 Alju01g1090 01 8339716 8343679 ECH