Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1040 ATGGAAGCGAATGGGCATTGTGAGGAAGATCGGCCGGTACAAGCCCAGTGCCTGAGCAGCTATGTGGACGAAGGCAGCATTGAGAGTCACAGATACTACCTCTCTCGAAAGACTGTGCTCGAGATGCTCAGAGACAGAGGCTTTTCTATTCCCTCCTCCGAAATCGACCTCTCTCTCGCCGAATTTCGTGCCATTCATGGCCAATCCCCCGACATTGAACGCCTCCGCTTCTCCGCCACTCATGCCTCTGACCCTTCCAAGCGGATTTTGGTCTCTTTCTGCTGGCCTGGGGTTGTTAAAGTTAATGTGGTCCGGAGCCTTGCAAGTCAGCTTTTTAACACAGACACTTTATCTGGGATGATATTGATAGTACAGGACCAAATTACTAGCCAGGCCTTGAAAGCCTTAGAGAATTTCAAGTTCAAGGTTGAAGTTTTCCAGATCACCGATTTACTTGTTAACATTACAAAGCATGTCTTGAAGCCAAAGCATGAAGTGCTAACTAATCAACAGAAGCAAGAGCTTTTGAAGAAATACAATGTGGAAGAAAAGCAGCTTCCCCGTATGCTGCAGAAAGATGCCATTGCGCGATACTATGGACTGGAGAGGGGACAGGTGGTTAAAATCACATATAGTGGTGATATCTCCCAGATGCATGTCACATACCGATGTGTTTGGTGA 681 0.4699 MEANGHCEEDRPVQAQCLSSYVDEGSIESHRYYLSRKTVLEMLRDRGFSIPSSEIDLSLAEFRAIHGQSPDIERLRFSATHASDPSKRILVSFCWPGVVKVNVVRSLASQLFNTDTLSGMILIVQDQITSQALKALENFKFKVEVFQITDLLVNITKHVLKPKHEVLTNQQKQELLKKYNVEEKQLPRMLQKDAIARYYGLERGQVVKITYSGDISQMHVTYRCVW 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1040 226 PIRSF RPB5 21 226 IPR014381 GO:0003899
Alju01g1040 226 Gene3D - 23 150 IPR036710 GO:0003677|GO:0003899|GO:0006351
Alju01g1040 226 Pfam RNA polymerase Rpb5, N-terminal domain 28 110 IPR005571 GO:0003677|GO:0003899|GO:0006351
Alju01g1040 226 Pfam RNA polymerase Rpb5, C-terminal domain 153 225 IPR000783 GO:0003677|GO:0003899|GO:0006351
Alju01g1040 226 Gene3D - 151 226 IPR035913 -
Alju01g1040 226 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 26 154 IPR036710 GO:0003677|GO:0003899|GO:0006351
Alju01g1040 226 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 151 226 - -
Alju01g1040 226 SUPERFAMILY RPB5-like RNA polymerase subunit 151 226 IPR035913 -
Alju01g1040 226 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 27 226 IPR014381 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1040 Alju-ChrAlju01 7796738 7800438 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1040 01 7796738 7800438 Alju01g1040 01 7796738 7800438 ECH