Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0885 ATGGATACGAATATTTCTCCACAAGCATTGCGGACGCCTGGTTGCAAAAGTTTTTCTGCCAGTTTGCTGAAGGATGTGTGGCTTGTTGTGCGAGAAGGATCTCTAAATGACGTAGAGGCAGCGTTGGCATTATTAAAGAAGAATGGAATCAATATCAATTCAAGGAACATATTTGGGCTGACTCCTCTTCATATTGCCACTTGGAGGAACCACATCCCCATTGTCAGGAGACTTCTTGCAGCTGGTGCAGACCCTGATGCTCGAGATGGAGAATCAGGATGGAGCAGCCTTCACAGGGCTTTGCATTTTGGACATCTTGCTGTGGCCAGCATCCTTCTTCAGCATGGTGCCTCTATTACAATGGAGGACTATAAATCTCGAGTACCTGTAGATCTCTTATCTGGCCCCGTGTTTCAGGCCTTCAGAAATGAATGTGATTCAGTGGTTACTGAGGTCTTTAGTTGGGGAAGTGGCACAAACTATCAGCTTGGAACTGGAAATGCGCACATTCAAAAGTTGCCATGTAAAGTTGATTCACTTGGTGGTTCCTACATAAAGTTGATTTCTGCCGCAAAATTCCACAGTGTGGCTGTTACAGCTATTGGAGAGGTGTACACCTGGGGATTTGGGAGAGGGGGCCGTTTAGGTCACCCGGATTTTGACATCCATAGTGGTCAAGCTGCAGTCATCACTCCCCGGCAGGTGACTTCTGGTCTTGGTGCTCGTCGAGTGAAGGCAATTGCTACTGCTAAGCATCATACTGTTGTTGCTACAGAAGGTGGTGAATTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGCTACCCTTCTGTTGATACCCAGCCCACACCCCGTAGAGTGGCTTCTTTACGGTCCAAAATTGTTGCTGTTGCTGCAGCAAACAAGCATACTGCTGTAGTTTCTGATTTAGGGGAAGTTTTTACCTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCGCATGTAGTTGAATACTTGAAGGGAAAGAATTTGACTGGAGTTTCTGCTGCAAAATATCATACAGTTGTATTAGGATCTGATGGAGAGGTATATACTTGGGGTCATCGCTTTGTTACTCCAAGACGTGTAGTCATTACTAGGAACTTGAAGAAAAGTGGAAGCACTCTTTTGAAGTTTCACCGCATGGAACGACTTCATGTAGTTTCCATAACTGCTGGAACGATCCATAGCACAGCTCTTACAGATGATGGTGCACTGTTCTATTGGGTCTCCTCAGATCCTGATCTTACATGCCAACAGCTATATGCTATGTCTGGAAGAAATATGGTGAGTGTCTCTGCTGGAAAGCACTGGACTGCAGCTGTTACAACTACCGGTGATGTTTATATGTGGGATGGGAAGAAAGGTAAGGAAAAGCCACCTGTTGTGACTCGTTTGCATGGTGTAAAGAGGGCCACTTCAGTTTCTGTTGGTGAAACACATTTACTGATTGTGGCTTCCCTCCATCATTCTGGCTATCCTCTTAATATGACAAAGACTTCCCGGGAACTCAAGCTGAATCATAGGGATGATGTGGAAGAGATTACAGAAGATATTTTATTTGAGGATTTGGAATCCAATAATAACTGTATACAAAAAGATAATTTTGGGAAGAGGATTGTACCTAGTTTAAAAAGCCTTTGTGAAAAGGTTGCGGCAGAATGTATAGTGGAGCATCGTAATGCCATTCAGTTGCTTGAGATTGCTGATTCTCTAGGAGCCGATGATTTGAAGAAATATTGTGAGGAGACTGTCATTCGCAACCTTGATTATATCTTTACAGTTTCATCACATTCTGTGGAAAGTGCTTCACTAGATATTCTGGCTAACCTTGAGACATTGTTAGACCAGAGATCATCTGAACAATGGTGTCACCGCCGACTCCCTCCTGTAACTGCTCCTTTTCCTCCCGTTATAAACAATGAAGAGGATGATAGTGACATGGAGTTTCACAGGACCCGTGACAAACCCATGAAGTTGAAGCTGGAAAAATATCAAAGACTAGATTCATTTCTCCAGCCTAAGGATGATCCCAATCACGAAAACTCCAAAGTAGTTCGAGCTCTAAGGAAGAAGTTGCAGCAGATTGAGGCGCTTGAAGTTAAGCAATCAAAGGGTCATCACCTTGATGACCAGCAGATTGCAAAACTTCAGTCTAAGTCAGCTTTGGTGAGGTCACTTGCAGAGCTAGGTGTTCCTATTGAAACTTCACAGAATAAAGAGTTGTCTTCAGCGCATTCAGAAGGGAAAGGTAATAAAAAAGGCAAACTATCAAGAAAACAGAAGAAGAACAACGCACCAAGTGTGGTGCAGAGTGAAGTGGAATCTATTTATGCTGGAACAGAAGTGATATCAGAACCTGCAGAGGACATGTTAGACATTAAAATCTCGGAGGCTTCTGAGATAAAGGTGGAAGATTGTCCTTGTGAACAAACTGCAGCGGACAAAGATGCAATGGATTCAGCCCTTGTGGTCCAGAAGAAAGACGTTTTAGAGTTGCCAAGCAAGGATCAGGCAATGAAAGTTTTTAAGAAGAAGAGTAAGAAAGGTGGGCTTTCTATGTTTTTAAGTGGCGCCCTTGATGATGCCCCAAAAGAGGTGGCCTCCCCACCACTAATGCCAAGAAATGAGGGTCCTGCGTGGGGTGGGGCCAGGTTTTTAAAGGGTTCTGCTTCTCTTCGTGAAATTCAGGTTGAGCAGAGCAAAATCAAGGAAAACAAGCCAAGTAAGAGCAAACGCCAGGAACAAGATCTTTCTGATAGTAGCAGTGGGGGGAAAATATCATTAAGTTCATTTCTTCCTTCCAGTCCAATACCTGTTGCCCCAACTCGTAGTTCCCGGGTATCTGATGGAGAAAGAAGTAGCCCCTCTTGGGCTGCTTCGAGAACCCCACCTCAACCATCTCGGCCATCTTTAAGGGACATTCAAATGCAGCAGGGGAAAATGCACGAGGGTTTGTCCCATAGTCCAAAGACCAGAACAACTGGTTTTGCTGTATCTACAGGTCAGGGCTCGCCATCCGAAGCTACTGGGATGAACCGCTGGTTCAAGCCAGAGGTGGAGACAATATCCTCAATCCGGTCTATTCAGATTGAGGAAAAGGCCATGAAGGATCTCAAGCGCTTCTACAGCAGCGTTAAGGTTGTCAAAAAGAGTCTTGAGGGTTGA 3222 0.4475 MDTNISPQALRTPGCKSFSASLLKDVWLVVREGSLNDVEAALALLKKNGININSRNIFGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASILLQHGASITMEDYKSRVPVDLLSGPVFQAFRNECDSVVTEVFSWGSGTNYQLGTGNAHIQKLPCKVDSLGGSYIKLISAAKFHSVAVTAIGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGARRVKAIATAKHHTVVATEGGELFTWGSNREGQLGYPSVDTQPTPRRVASLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVEYLKGKNLTGVSAAKYHTVVLGSDGEVYTWGHRFVTPRRVVITRNLKKSGSTLLKFHRMERLHVVSITAGTIHSTALTDDGALFYWVSSDPDLTCQQLYAMSGRNMVSVSAGKHWTAAVTTTGDVYMWDGKKGKEKPPVVTRLHGVKRATSVSVGETHLLIVASLHHSGYPLNMTKTSRELKLNHRDDVEEITEDILFEDLESNNNCIQKDNFGKRIVPSLKSLCEKVAAECIVEHRNAIQLLEIADSLGADDLKKYCEETVIRNLDYIFTVSSHSVESASLDILANLETLLDQRSSEQWCHRRLPPVTAPFPPVINNEEDDSDMEFHRTRDKPMKLKLEKYQRLDSFLQPKDDPNHENSKVVRALRKKLQQIEALEVKQSKGHHLDDQQIAKLQSKSALVRSLAELGVPIETSQNKELSSAHSEGKGNKKGKLSRKQKKNNAPSVVQSEVESIYAGTEVISEPAEDMLDIKISEASEIKVEDCPCEQTAADKDAMDSALVVQKKDVLELPSKDQAMKVFKKKSKKGGLSMFLSGALDDAPKEVASPPLMPRNEGPAWGGARFLKGSASLREIQVEQSKIKENKPSKSKRQEQDLSDSSSGGKISLSSFLPSSPIPVAPTRSSRVSDGERSSPSWAASRTPPQPSRPSLRDIQMQQGKMHEGLSHSPKTRTTGFAVSTGQGSPSEATGMNRWFKPEVETISSIRSIQIEEKAMKDLKRFYSSVKVVKKSLEG 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0885 1073 ProSiteProfiles Ankyrin repeat profile. 58 90 IPR002110 GO:0005515
Alju01g0885 1073 MobiDBLite consensus disorder prediction 1000 1028 - -
Alju01g0885 1073 ProSiteProfiles Ankyrin repeat region circular profile. 92 123 - -
Alju01g0885 1073 MobiDBLite consensus disorder prediction 916 1030 - -
Alju01g0885 1073 MobiDBLite consensus disorder prediction 881 902 - -
Alju01g0885 1073 Pfam Ankyrin repeats (3 copies) 39 123 IPR002110 GO:0005515
Alju01g0885 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 151 198 IPR000408 -
Alju01g0885 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 261 308 IPR000408 -
Alju01g0885 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 312 362 IPR000408 -
Alju01g0885 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 202 256 IPR000408 -
Alju01g0885 1073 ProSiteProfiles Ankyrin repeat region circular profile. 58 89 - -
Alju01g0885 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 365 IPR000408 -
Alju01g0885 1073 ProSiteProfiles Ankyrin repeat profile. 92 124 IPR002110 GO:0005515
Alju01g0885 1073 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Alju01g0885 1073 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Alju01g0885 1073 PRINTS Chromosome condensation regulator RCC1 signature 151 167 IPR000408 -
Alju01g0885 1073 PRINTS Chromosome condensation regulator RCC1 signature 204 220 IPR000408 -
Alju01g0885 1073 PRINTS Chromosome condensation regulator RCC1 signature 314 328 IPR000408 -
Alju01g0885 1073 PRINTS Chromosome condensation regulator RCC1 signature 411 429 IPR000408 -
Alju01g0885 1073 Gene3D - 382 506 IPR009091 -
Alju01g0885 1073 Gene3D - 143 381 IPR009091 -
Alju01g0885 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 311 IPR000408 -
Alju01g0885 1073 SUPERFAMILY Ankyrin repeat 36 132 IPR036770 -
Alju01g0885 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 421 IPR000408 -
Alju01g0885 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 150 201 IPR000408 -
Alju01g0885 1073 SMART ANK_2a 58 87 IPR002110 GO:0005515
Alju01g0885 1073 SMART ANK_2a 92 121 IPR002110 GO:0005515
Alju01g0885 1073 Gene3D - 24 142 IPR036770 -
Alju01g0885 1073 PANTHER BTK-BINDING PROTEIN-RELATED 23 1063 - -
Alju01g0885 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 260 IPR000408 -
Alju01g0885 1073 MobiDBLite consensus disorder prediction 916 937 - -
Alju01g0885 1073 SUPERFAMILY RCC1/BLIP-II 115 427 IPR009091 -
Alju01g0885 1073 MobiDBLite consensus disorder prediction 756 787 - -
Alju01g0885 1073 MobiDBLite consensus disorder prediction 938 993 - -
Alju01g0885 1073 SUPERFAMILY RCC1/BLIP-II 403 502 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0885 Alju-ChrAlju01 6563961 6571168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0885 31 132 Acyl Lipid Metabolism Gene Families AT5G53470 38.235 1.11e-09 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0885 01 6563961 6571168 Alju01g0885 01 6563961 6571168 ECH