Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0820 ATGAAGAACAATAAAGAATCCAGATCAAATCGCAACAACCCTGTAAAGAAAACACGAAGAGTGACGATAGATGATGTTTTGCAAGCATCCCAAGAGACGAAGGAACAGAGGGAACAAAGGATCCGTAGTTTATTCAGTTTCTTTGATAAGGAAAATTCTGGTATCGTAGAGTATGCCCAGATTGAAGCTGCTCTATCTGAGCTTCATATACCTCCAGAATATAAACATGCCAAAGATTTCTTAAAAGCTTGTGATGCCAACAAAGACGGACGGGTTGATTATAAGGACTTCAAGAAGTATGTAGACAACAAGGAAATAGAGCTTTACCGCTTATTTCAAGCCATTGATGTCGAACACTATGGATGCATTGTGCCAGGAGAACTCTGCGAGGCCCTGGTAAAGGCAGGGATTCAGATTGATGAAGAGGAAGTCGCCCTTTTTATGGAGCATGTGAACAAGGATGATAATGAGGTTATAACATTTGAAAAATGGAGGGATTTTCTTCTGCTTTACCCAAAAGAGGCCACTATTGAGAACATTTACCATTATTTAGAGCGTGTATGCCTTATTGATATTGGGGAACACACAGTGAGTCCTACAGGCATAAGTGGAAACATCCATGCGGTTAAGTATTTGTTTGCTGGAGGATTGGCAGGGGCAGCATCACGCACAGCAACTGCACCACTTGATCGTTTAAAGATCGTATTGCAAATCCAAACCACAAGAGCTCATATAATGCCTGCACTTAGAAATATATGGAAGCAAGATGGTTTCTTGGGGTTTTTTCGAGGCAATGGCTTAAATGTCCTGAAGGTGGCCCCTGAGAGTGCTATAAGATTTTACACTTATGAGACACTCAAGACTTGGATTTTAAATTCTAAAGGGGGTGGTGGGGCAATAAACCCTGATATTGGGACTGTGGGGCACGTACTGGCTGGTGGGATGGCTGGTGGGATAGCTCAAACTACAATATATCCAATGGACCTTATAAAAACAAGAGTACAGACCTATGTTTATCGTGAAGGCGTAAGAATTCCTCGTCTTGGAGCACTCTCTAAAGATATATGGGTTCAGGAAGGACCTCGTGCATTCTATAGGGGTTTGGTTCCTTCTCTTCTTGGGATTATCCCTTATGCTGGTATAGATATAGCTGCATATGAGGCTCTGAAAGATATGTGCAAGTATATTCTTCATGATGGAGAACCTGGTCCTCTTGTACAACTGGGCTGTGGGACAGTGTCAGGAGCCCTTGGAGCAACATGTGTATACCCATTACAGGTCGTTAGAACAAGAATGCAAGCTCAACGGTCCAATACTAGCACAGCTCATAAAGGAATGACTGAAGTGTTCAGGAGAACCTTTGAGCATGAAGGGTTTAGAGGATTCTACAAAGGGATATTTCCCAACCTTCTCAAAGTCATTCCGTCGGCAAGCATCACTTATGTGCTCTACGAAACTATAATAAAGGCACACTTCACTTCCTTCGTTTGCTCCTTCTCCCGCCGCTCAAGCAGTCGTCTCCTCTTCAAAACTAGGGTTTTGTTTGAGCTTTCCTGCGCTTCGACTTTTCACAAAATGGTTCTTCAAAATGATATTGATCTGTTAAATCCCCCAGCTGAGCTGGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTCCAGTCTCCAAACTCTTTCTTCATGGATGTGAAGTGCCAGGGTTGCTTTAATATAACCACTGTTTTCAGCCATTCTCAGACTGTTGTAGTTTGTGGCAACTGCCAAACTGTCTTATGCCAGCCCACAGGTGGACGGGCTAGGCTAACAGAGGGCTGCTCTTTTAGGAAGAAGGGGGACTAA 1836 0.433 MKNNKESRSNRNNPVKKTRRVTIDDVLQASQETKEQREQRIRSLFSFFDKENSGIVEYAQIEAALSELHIPPEYKHAKDFLKACDANKDGRVDYKDFKKYVDNKEIELYRLFQAIDVEHYGCIVPGELCEALVKAGIQIDEEEVALFMEHVNKDDNEVITFEKWRDFLLLYPKEATIENIYHYLERVCLIDIGEHTVSPTGISGNIHAVKYLFAGGLAGAASRTATAPLDRLKIVLQIQTTRAHIMPALRNIWKQDGFLGFFRGNGLNVLKVAPESAIRFYTYETLKTWILNSKGGGGAINPDIGTVGHVLAGGMAGGIAQTTIYPMDLIKTRVQTYVYREGVRIPRLGALSKDIWVQEGPRAFYRGLVPSLLGIIPYAGIDIAAYEALKDMCKYILHDGEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSNTSTAHKGMTEVFRRTFEHEGFRGFYKGIFPNLLKVIPSASITYVLYETIIKAHFTSFVCSFSRRSSSRLLFKTRVLFELSCASTFHKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0820 611 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Alju01g0820 611 Pfam Ribosomal protein S27 555 609 IPR000592 GO:0003735|GO:0005840|GO:0006412
Alju01g0820 611 Gene3D - 530 610 IPR023407 -
Alju01g0820 611 ProSiteProfiles Solute carrier (Solcar) repeat profile. 304 392 IPR018108 -
Alju01g0820 611 FunFam 40S ribosomal protein S27 526 611 - -
Alju01g0820 611 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Alju01g0820 611 Pfam Mitochondrial carrier protein 206 293 IPR018108 -
Alju01g0820 611 Pfam Mitochondrial carrier protein 303 393 IPR018108 -
Alju01g0820 611 Pfam Mitochondrial carrier protein 403 490 IPR018108 -
Alju01g0820 611 Gene3D - 1 105 - -
Alju01g0820 611 SUPERFAMILY EF-hand 31 177 IPR011992 -
Alju01g0820 611 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Alju01g0820 611 PANTHER SOLUTE CARRIER FAMILY 25 161 487 - -
Alju01g0820 611 MobiDBLite consensus disorder prediction 1 21 - -
Alju01g0820 611 FunFam Mitochondrial substrate carrier family protein 202 492 - -
Alju01g0820 611 Hamap 30S ribosomal protein S27e [rps27e]. 549 609 IPR000592 GO:0003735|GO:0005840|GO:0006412
Alju01g0820 611 Gene3D Mitochondrial carrier domain 202 493 IPR023395 -
Alju01g0820 611 SUPERFAMILY Mitochondrial carrier 206 486 IPR023395 -
Alju01g0820 611 ProSiteProfiles Solute carrier (Solcar) repeat profile. 206 289 IPR018108 -
Alju01g0820 611 ProSitePatterns Ribosomal protein S27e signature. 563 595 IPR000592 GO:0003735|GO:0005840|GO:0006412
Alju01g0820 611 SUPERFAMILY Zn-binding ribosomal proteins 555 609 IPR011332 GO:0006412
Alju01g0820 611 Gene3D - 120 194 - -
Alju01g0820 611 ProSiteProfiles Solute carrier (Solcar) repeat profile. 402 490 IPR018108 -
Alju01g0820 611 SMART efh_1 40 68 IPR002048 GO:0005509
Alju01g0820 611 SMART efh_1 107 135 IPR002048 GO:0005509
Alju01g0820 611 SMART efh_1 76 104 IPR002048 GO:0005509
Alju01g0820 611 PRINTS Mitochondrial carrier protein signature 264 284 IPR002067 GO:0055085
Alju01g0820 611 PRINTS Mitochondrial carrier protein signature 319 337 IPR002067 GO:0055085
Alju01g0820 611 PRINTS Mitochondrial carrier protein signature 224 238 IPR002067 GO:0055085
Alju01g0820 611 PRINTS Mitochondrial carrier protein signature 365 383 IPR002067 GO:0055085
Alju01g0820 611 PRINTS Mitochondrial carrier protein signature 211 224 IPR002067 GO:0055085
Alju01g0820 611 PRINTS Mitochondrial carrier protein signature 411 433 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0820 Alju-ChrAlju01 6066895 6071315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0820 1 490 EF-hand Containing Proteins AT5G51050 64.358 0.0 650
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0820 01 6066895 6071315 Alju01g0820 01 6066895 6071315 ECH