Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0252 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATTCTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAGTCTGTGCACAGGCTTGAGAAGGAGTCTGGGTTTTTCTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTATCAGGATTTACTAAAGTTGATGATAATCGATACTCCATGAAGATTTTCTTTGAAATTAGAAAACAAAAATATCTGGAAGCGCTTGATAGGCAAGACAAGTCAAAGGCTGTTGAGATATTAGTGAATGATTTGAAAGTATTCTCCACTTTCAATGAGGATCTATATAAAGAAATCACCCAGCTGTTAACTCTTAGTAATTTCAGGGAGAATGATCAGCTGGCCAAGTACGGTGACACTAAAACAGCTCGAAGCATTATGTTGATAGAGCTGAAAAAATTGATAGAAGCAAACCCTCTATTTCGTGATAAGCTTCTCTTCCCTACTCTTAAATCATCGAGATTGAGGACGCTAATCAATCAAAGTTTGAACTGGCAGCATCAGCTTTGCAAAAATCCAAGGCCCAACCCAGATATTAAGACTTTATTTACAGATCACTCATGTTCACCTCCTAATGGTCCTTTAACACCAACACCTGTCAATCTTCCAGTTGCTGCTGTTGCTAAGCCTGCTGTTTATACATCACTTGGTGCTCATGGTTCCTTCCCACCTGCTGCAGCTTCTGCTAATTCTATAGCTGGTTGGATGGCCAATGCTTCTGCTTCATCATCTGTCCAAGCAGCAGTTGTCACAGCATCATCCATGCCTGTTGCTCAGAATCAAGTGCCCATCTTGAAACGTCCTAGAACACCTCCGGCACCCCCTGGTTTGGTTGATTATCAGAATTCTGATCATGAGCAGTTAATGAAAAGGCTTCGGCCTGTTCATTCTGTAGAGGAGGTTTCCTATCCTACAACTCGACAAGCTTCTTGGTCACTGGATGATTTTCCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTTAACAGCATGGACTTTCATCCTTCACACCATACATTACTTCTTGTTGGTTCTACTAATGGTGAAATTGCCCTATGGGAACTTGGGTTACGGGAGAGGTTGGTTTCAAAGCCATTCAAGATATGGGATCTATCGGCATGCTCATTGCCATTTCAGGCAGCTGTTGCCAAAGATGCACCAATCTCTGTCAGCCGTGTTATGTGGAGCTTGGACGGAAATTTTGTTGGTGTTGCATTTAGCAAACATTTGGTTCACTTGTATGCCTATACTGGGTCAAATGAGCTGAGCCAACGACTGGAGATTGATGCCCATACTGGTGGCGTGAATGACCTGGCATTTGCTCATCCAAATAAACAACTATGTATTCTGACCTGTGGTGATGATAAGATGATAAAGGTGTGGGAGTTGAATGGACGAAAACTATTCAACTTTGAGGGGCATGAAGCACCTGTCTATTCCATCTGTCCTCATCACAAAGAGAACATTCAGTTTATATTTTCAACTGCCGTTGATGGAAAAATAAAGGCATGGTTGTATGATAACATGGGTTCCAGAGTTGACTATGATGCTCCAGGTCACTGCTGTACCACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGAACAAGTAAAAATGGAGAATCTTTCCTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACGTATAACGGGTTCAGAAAGAAATCAAATGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGACGGCCAAATAAAGTTCTGGGATATGGACAATGTTAATCTCGTAGCAAGCACTGATGCAGAGGGTGGACTACAGAGCCTTCCACGTTTGAGATTTAATAAAGAAGGGAATCTTCTTGCTGTTACTACTGCGGACAATGGATTCAAGGTGCTCGCAAATGCTGTTGGTCTGAGATCCTTAAGGGCATTGGAAACACCAGCATTTGAAGCATTGAGATCTCCCATAGAATCAGCTGCAAATAAGGTTTCTGGCCCCCCTGCTGTAAATGTCAGTCCTGTCAACTGTAAAGTGGAGAGGAGCTCACCTGTCAGGCCATCTCCAATCCTTAATGGAGTTGACCCTATGGGTCTAAGTTTGGAGAAACCTAGAACCATGGAAGATGTGATAGATCGAACTAAACCATGGCAGCTATCTGAAATCTCAGATGCCATCCAATGTCGGTTAGTTACAATGCCTGAGAGTGCAGATGCTTCCAGCAAGGTTGTTCGACTTTTATATACAAATTCTGGTGCCGGGGTTTTGGCACTTGGGTCAAATGGTATTCAGAAACTGTGGAAGTGGACTCGTAATGAACAGAATCCTACTGGGAAGGCCACTGCCAGTGTTGTTCCCCAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATATTTCTGGTGTCAACCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGACTCTTATGTTATGTCCGCCTGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACGACATTCATGCCACCACCTCCTGCCTCTACTTTCCTGTCTTTCCACCCACAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACGATTCACATTTATAATGTTAGAGTGGATGAGGTCAAATCAAAATTGAAGGGTCACCAGAAGCGTATTACTGGTTTAGCCTTTTCAACCAATCTTAACATACTGGTCTCATCTGGCGCTGATGCCCAACTTTGCGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCGATGACAATACAACTACCTGCGGGAAAGGCTCCTGTCGGTGATACCAGAGTCCAGTTCCATTCTGACCAACTCCGCTTATTGGCAGTTCATGAGACTCATTTGGCAATATATGATGCTTCCAAGATGGATCGCATTCGACAGTGGCTTCCACAAGATATTCTGCCTGCTCCCATATCATATGCAACTTATTCAAGCAACAGTCTGTTAATATATGCTTCTTTTGTTGATGGTAACATTGGGGTCTTTGATGCTGATAGCTTGAGGCTAAGGTGTCGTATTGCTCCATTAGCATACTTATCACAGGCGGCTTTAAGTGGAAGCCAAGCTGTTTACCCTATTGTGGTTGCAGCTCATCCACAAGAGCCCAACCAATTCGCCGTTGGATTGACCGATGGATCCGTCAAAGTAATAGAGCCCTCTGAATCAGAGGGTAAATGGGGATCTACCCCACCTGTAGATAATGGAGTGCTAAGCGGTAGGCAAGGGCAATCATCTGCTTCAAATATACACACTCCTGATCAGGCACAAAGATAA 3384 0.4314 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKSKAVEILVNDLKVFSTFNEDLYKEITQLLTLSNFRENDQLAKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPPNGPLTPTPVNLPVAAVAKPAVYTSLGAHGSFPPAAASANSIAGWMANASASSSVQAAVVTASSMPVAQNQVPILKRPRTPPAPPGLVDYQNSDHEQLMKRLRPVHSVEEVSYPTTRQASWSLDDFPRTVAMTLHQGSSVNSMDFHPSHHTLLLVGSTNGEIALWELGLRERLVSKPFKIWDLSACSLPFQAAVAKDAPISVSRVMWSLDGNFVGVAFSKHLVHLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPNKQLCILTCGDDKMIKVWELNGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHCCTTMLYSADGSRLFSCGTSKNGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNLVASTDAEGGLQSLPRLRFNKEGNLLAVTTADNGFKVLANAVGLRSLRALETPAFEALRSPIESAANKVSGPPAVNVSPVNCKVERSSPVRPSPILNGVDPMGLSLEKPRTMEDVIDRTKPWQLSEISDAIQCRLVTMPESADASSKVVRLLYTNSGAGVLALGSNGIQKLWKWTRNEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLSFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSMTIQLPAGKAPVGDTRVQFHSDQLRLLAVHETHLAIYDASKMDRIRQWLPQDILPAPISYATYSSNSLLIYASFVDGNIGVFDADSLRLRCRIAPLAYLSQAALSGSQAVYPIVVAAHPQEPNQFAVGLTDGSVKVIEPSESEGKWGSTPPVDNGVLSGRQGQSSASNIHTPDQAQR 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0252 1127 SMART WD40_4 333 372 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 859 899 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 902 941 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 820 856 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 482 523 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 1047 1088 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 997 1033 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 572 612 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 437 480 IPR001680 GO:0005515
Alju01g0252 1127 SMART WD40_4 526 569 IPR001680 GO:0005515
Alju01g0252 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 489 IPR001680 GO:0005515
Alju01g0252 1127 MobiDBLite consensus disorder prediction 1088 1127 - -
Alju01g0252 1127 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Alju01g0252 1127 Gene3D - 538 670 IPR015943 GO:0005515
Alju01g0252 1127 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Alju01g0252 1127 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 944 - -
Alju01g0252 1127 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Alju01g0252 1127 FunFam Topless-related protein 3 728 962 - -
Alju01g0252 1127 SMART Lish 4 36 IPR006594 GO:0005515
Alju01g0252 1127 SMART ctlh 34 92 IPR006595 -
Alju01g0252 1127 Pfam WD domain, G-beta repeat 446 479 IPR001680 GO:0005515
Alju01g0252 1127 Pfam WD domain, G-beta repeat 908 941 IPR001680 GO:0005515
Alju01g0252 1127 SUPERFAMILY WD40 repeat-like 323 653 IPR036322 GO:0005515
Alju01g0252 1127 MobiDBLite consensus disorder prediction 1104 1127 - -
Alju01g0252 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 621 IPR001680 GO:0005515
Alju01g0252 1127 SUPERFAMILY WD40 repeat-like 827 1089 IPR036322 GO:0005515
Alju01g0252 1127 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1109 IPR027728 GO:0006355
Alju01g0252 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 950 IPR001680 GO:0005515
Alju01g0252 1127 Gene3D - 297 535 IPR015943 GO:0005515
Alju01g0252 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 381 IPR001680 GO:0005515
Alju01g0252 1127 Gene3D - 826 1096 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0252 Alju-ChrAlju01 1982084 1992237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0252 333 556 Miscellaneous Gene Families AT5G08390 26.087 7.57e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0252 01 1982084 1992237 Alju01g0252 01 1982084 1992237 ECH