Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02877 ATGGGGAGTGATGACAGTCTGAAGGCATGGGTATCAGATAAGTTGATGTCACTGCTTGGATATTCTCAGCCCACAGTTGTACAGTACATGATTGGATTATCCAAGCAGGCTGCTTCACCAGCAGATTTGGCGGGTAAACTAGTGGAGTTTGGGATCTCATCGTCAGATACTCATGCATTTGCTGATGAAATATTCTCTCGAGTTCCTCGTAAATCTTCTGGTTTAAATCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTAGTAAGGAAGCAGAGGACTTATGACATTTTGAAGGCTGATGATGATGATGATGATTATGTTGGTGGTGAAGATAAATCTTCCAAAGCTACTACTTCAACGTCTAAAAAGATTGATAGCCGTAACAAACGTTTCAGGAAGAAAACTGAATATCAAGATGATGAAGATGATGAGGTAATTTCAAGAAAGGAAATGGAGAGACAAGTTAAGAGACGAACTTCTCCCGGTGAAGATACTGGATCAGAGTCAGAAGAAGAAAGATTAAAAGATCAAAGAGAGAAGGAGGAACTAGAGCAACATCTGAAAGAAAGAGATGCAGCAGGGACCCGGAAGTTGACTGAACAAAAATTGACAAGAAGGGAAGAAGAAGAGGCAATTCGAAGATCTACTGCACAAGAGCAGGATGATATTCAAGCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAGAAGAAGTTAGAAGAACTGAGAGATGATATAGAAGATGAACAATATTTGTTTGAGGGCGTGAAGCTTACCGAAGCAGAATATCGTGAGCTTAGATACAAGAAAGAAATATATGAACTTGTAAAGAAACGGTCAGAGGAGGCTGACAATGTCAATGAGTATAGGATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAACGTTACAGGGATACAAATGCTGAGGAGAAAAAACAAGCCGCCGATGACTATCAGTTTGTTTTCGAGGACCAGATTGATTTTATCAAGGCATCAGTGATGGATGGAGATAATTTTGATTATGAAGAAATGGAAGATTCACTTGAAAAGTCCAGAGCAAAGTCAGCTTTAGAGGCACTTCAGGAGGAGAGGAAAAAGTTGCCCATTTATCCTTATCGGGACGAATTGCTCCAAGCCGTGCGTGATCATCAGGTGCTTGTAATTGTTGGAGAAACTGGTTCTGGAAAGACCACACAGATTCCCCAATATCTTCATGAGGCTGGCTACACAAAGCAAGGAATGATTGCATGTACCCAACCACGGCGTGTTGCAGCTATGAGTGTTGCTGCTCGTGTTTCTCAAGAAATGGGTGTTAAGCTAGGACATGAGGTTGGTTACTCTATCCGGTTCGAGGACTGTACATCGGAGAAGACTATTCTGAAATATATGACTGATGGAATGTTGTTGAGGGAATTCCTTGGTGAACCTGATCTGGCAAGTTACAGTGTTGTCATGGTGGATGAGGCTCATGAAAGGACACTCTCAACTGATATTTTGTTTGGATTAGTAAAGGATATTTCTCGTTTCCGGCCTGATCTTAAGTTGCTGATATCTAGTGCTACACTAGATGCAGAGAAGTTCAGTGACTACTTTGATTCTGCTCCAATATTTAAAATTCCAGGGAGACGGTATCCTGTTGAAATAAACTTTACAAAAGCACCAGAAGCTGACTATTTAGATGCAGCTATTGTCACATCACTTCAAATCCATGTCACTCAACCTCCTGGTGATATCTTGGTGTTCCTTACTGGTCAAGAAGAAATTGAAACTGCTGAAGAAATCTTAAAGCATCGAACTAGAGGCTTGGGCACAAAAATTGCCGAGTTAATAATATGCCCTATATATGCCAACCTACCAACTGAGCTACAGGCTAAAATATTTGAACCCACACCTGAAGGGGCAAGAAAGGTTGTCCTTGCAACTAATATTGCTGAAACATCGTTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCCTTATTGGTAACACCCATCTCAAAAGCTTCAGCAATGCAAAGAGCTGGGCGTTCTGGAAGAACAGGACCTGGGATGTGCTTCCGATTGTATACTGCATATAACTTTCACAATGATCTAGATGATAACACTGTTCCAGAAATACAACGGACTAACCTGGCAAATGTAGTGTTGACTTTGAAAAGTCTTGGTATTCATGACTTGCTTCACTTTGACTTTATGGATCCTCCACCTGCAGAGGCATTATTGAAAGCCCTAGAGCTTCTGTTTGCATTAAGTGCACTAAATAAACTGGGTGAGTTAACAAAGGTTGGAAGACGGATGGCAGAGTTCCCAGTTGATCCTATGTTGTCAAAAATGATTGTAGCTTCAGAAAAGTACAAGTGTTCAGATGAGATCATTTCTATTGCTGCTATGCTTTCTGTTGGGAACTCGATTTTTTATCGTCCAAAGGATAAACAAGTCCATGCAGACAATGCAAGGATGAACTTTCACACTGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAACTCATGGAAGGAGACCAACTATTCAACACAATGGTGCTATGAAAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATGTCCGTGATCAACTCGCAGGTCTTCTAGAGCGGGTTGAGATTGAACTAACGTCAAATTCTAGCGATTTGGATGCCATCAAGAAATCCATAACATCTGGATTTTTCCCACATTCTGCACGACTGCAAAAGAATGGATCATATCGAACTGTTAAACATCCACAGACTGTTAACATACATCCTAGTTCGGGGCTGGCACAGGTTCTTCCAAGATGGGTTGTATATCATGAACTAGTGCTTACAACCAAAGAATATATGAGACAGGTCACTGAATTAAAGCCAGAGTGGTTGGTGGAGATAGCTCCTCACTATTACCAGCTCAAGGATGTTGAAGACGCTGGTTCCAAGAAAATGCCCCGTGGAGAAGGACGTGCACAATAG 3069 0.4115 MGSDDSLKAWVSDKLMSLLGYSQPTVVQYMIGLSKQAASPADLAGKLVEFGISSSDTHAFADEIFSRVPRKSSGLNQYQKQEREAAMLVRKQRTYDILKADDDDDDYVGGEDKSSKATTSTSKKIDSRNKRFRKKTEYQDDEDDEVISRKEMERQVKRRTSPGEDTGSESEEERLKDQREKEELEQHLKERDAAGTRKLTEQKLTRREEEEAIRRSTAQEQDDIQALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLTEAEYRELRYKKEIYELVKKRSEEADNVNEYRMPEAYDQEGGVNQEKRFSVAMQRYRDTNAEEKKQAADDYQFVFEDQIDFIKASVMDGDNFDYEEMEDSLEKSRAKSALEALQEERKKLPIYPYRDELLQAVRDHQVLVIVGETGSGKTTQIPQYLHEAGYTKQGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGMCFRLYTAYNFHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPVDPMLSKMIVASEKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDVRDQLAGLLERVEIELTSNSSDLDAIKKSITSGFFPHSARLQKNGSYRTVKHPQTVNIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDAGSKKMPRGEGRAQ 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02877 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 907 IPR027417 -
Aip10g02877 1022 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 498 507 IPR002464 -
Aip10g02877 1022 PANTHER ATP-DEPENDENT RNA HELICASE 108 326 - -
Aip10g02877 1022 PANTHER ATP-DEPENDENT RNA HELICASE 325 1020 - -
Aip10g02877 1022 SMART ha2_5 774 866 IPR007502 GO:0004386
Aip10g02877 1022 Pfam Helicase associated domain (HA2) 775 849 IPR007502 GO:0004386
Aip10g02877 1022 Pfam Helicase conserved C-terminal domain 586 713 IPR001650 -
Aip10g02877 1022 SMART ultradead3 381 565 IPR014001 -
Aip10g02877 1022 Coils Coil 230 257 - -
Aip10g02877 1022 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 393 556 IPR014001 -
Aip10g02877 1022 MobiDBLite consensus disorder prediction 109 225 - -
Aip10g02877 1022 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 923 1000 IPR011709 -
Aip10g02877 1022 Gene3D - 559 734 IPR027417 -
Aip10g02877 1022 Coils Coil 892 912 - -
Aip10g02877 1022 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 579 754 IPR001650 -
Aip10g02877 1022 Gene3D - 343 558 IPR027417 -
Aip10g02877 1022 SMART helicmild6 605 713 IPR001650 -
Aip10g02877 1022 MobiDBLite consensus disorder prediction 101 225 - -
Aip10g02877 1022 CDD SF2_C_RHA 560 721 - -
Aip10g02877 1022 Gene3D - 758 917 - -
Aip10g02877 1022 PANTHER OS05G0389800 PROTEIN 325 1020 - -
Aip10g02877 1022 PANTHER OS05G0389800 PROTEIN 108 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02877 Aip-Chr10 122794604 122809477 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02877 K12813 - gmx:100809559 1783.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02877 10 122794604 122809477 Aip10g02877 10 122794604 122809477 ECH