Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02873 ATGTTGATTCAGATTCCTCGCTTCACAAACTCCCTCAGAAACCCCTTCGATGTCGACCAAGCCTACATCCATCGCAAAACCCTACTCCACAATCAAAATCCTCGCAATTCTGCGAACTCGCTTGATGAATCGGTACTTGCACGGAAGATCGTGGTTGGATGGGAAGAAGCTTCGTGGGAAGTGAGGCAGGCGTACAAGCAGTTTATAGGAGCAGTGGTGGAGCTGACTGATGGCGAAATGCGCTCTGAGGAGTTCCATGAAGTGGCGCTGACCGTGTACCGCCATTTCGGCAGGCCGATGGAGGATGAGGATTATCTTGATAGAATTATTGCGGATAAGAAGTTAGAATTGCAAAAGCTTGTTGGTCATGCTATTGCCGATACAAAGTTGAGGCATGTTGCGTCTCTAGCACAGAATCTTCTGAACTTGCAGCCTAGCAATAAACGCCCTGCCTTGTCTTCGGAAAGAAATCTGGATGATAATGAGGATTTGGAATTCGGGGCTGATTTTGTTTTCCAAGCACCAACGCGTTTTTTGGTTGATGTATCATTTGATAATGTAGATATGATGGATTTCAGGAGCACACTTCCTGTATCATTTCATGAAGAACAATATGCTCTTACTATTCCAACAGATCAGTCTGTTGATGCAGAAAAGTTCAACTTGACTTGGTTAAGAGAAGCATGTGATAAAATAGCTAGGAATTCTAATTCTCAGATATCCCGAGATGAATTAGCAATGGCCATCTGTAGGGTTCTTAATTCAGAAAAGCCTGGTGAAGAGATAGCAGGAGATCTGTTAGATCTGGCTGGTGATAGTGCATTTGAAACTGTGCAAAATCTTCTATTGCATCGAAAGGAGATTGTTGATTCAATTAATCATGGCTTGTCAGTATTGAAGTCTGATAAAAATGCTCCAAATTCTCAGTCTCGTATGCCTAGTTATGGGACGCAGGTTATCGTTCAAACAGAGTCAGAAAAGCAAATTGACAAGCTTCGGCGCAAGGAGGAAAAGCGAAACAGAAGGGGAATAGAATATGGCGGTGATGGTGACTTATCTGCATCTGACTTCTCGTCTTTACTACAAGCAAGTGAGAGGAAGAATTTATTTGATGATTTGATTGGTTCTGGGGATAAGTCCCAGTCAATAGCCGTAACTGCTCTTCCTGAAGGAACTGCGAGAAAGCATTTTAAAGGGTATGAAGAGGTTACCATTCCTCCTAAACCAACAGCGCCAATGAAACCTGGAGAAAAGCTGATTGAGATAAGGGAGTTAGATGACTTTGCTCAAGCTGCGTTCCGTGGTTACAAAACGCTAAACCGTATCCAGAGCAGAATATTTCAAACTGTTTATGGCACTAATGAGAATATACTGGTGTGTGCTCCCACAGGAGCTGGGAAAACTAACATAGCCATGATTTCAATTCTACATGAGATCGGACAGCATTTTAGGGATGGTTACTTGCACAAAGATGAATTTAAGATAGTTTATGTGGCTCCAATGAAGGCTTTGGCTGCGGAAGTCACATCAGCATTTAGCCAACGTCTATCTCCTTTGAATATGGTTGTCAGGGAGCTAACTGGAGATATGCAGCTTTCTAAGAATGAACTTGAAGAAACTCAGATGATAGTGACAACCCCTGAGAAATGGGATGTCATTACTCGCAAGAGTAGTGACATGTCACTCTCTATGCTGGTAAAGCTCTTGATCATCGATGAAGTGCACCTACTCAATGATGATAGAGGTCCTGTAATAGAGGCCCTAGTTGCTAGGACCCTACGGCAGGTGGAGTCAACTCAAACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACCTGGAGGTTGCTCAATTTCTTAGAGTAAATGCAGATACAGGTCTTTTCTTCTTTGATTCTAGTTATCGTCCAGTGCCTCTTGCACAACAGTATATTGGAATTAGTGAGCCAAATTTCGCAGCTCGAAATGAATTGTTGAATGATATATGTTATAAGAAGGTTGTTGATTCTATCAGGCAAGGTCATCAGGCAATGGTATTTGTCCATTCACGGAAAGACACTACAAAGACTGCTGAGAAGCTGGTTGAGCTTGCTCGGAGGAGTGAGGATTTGGAACTCTTTGGAAATGATACTCATCCACAGTTTAACTTAATGAAGAAGGAAGTAATTAAATCCAGAAACAGAAATCTTGTTGAACTTTTTGAATATGGCATGGGTGTTCATCATGCTGGGATGTTACGTGCAGATAGAGGGCTTACTGAGCGGCTTTTCTCTGAGGGTCTCCTGAAGGTACTTGTCTGTACAGCAACATTGGCATGGGGTGTCAATCTTCCTGCTCACACAGTTGTCATTAAGGGTACCCAATTGTATGATCCAAAAGCTGGTGGGTGGCGAGATCTGGGTATGCTTGATGTTATGCAGATATTTGGCCGAGCTGGCAGACCTCAGTTTGACAAAAGTGGTGAAGGTATCATAATTACATCTCATGATAAACTAGCTTATTATCTGCGACTGCTGACAAGTCAACTCCCTATAGAAAGCCAGTTCATTAGCTCCTTGAAAGATAATTTGAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTCAAAGAAGCCTGTGCATGGCTTGGCTATACCTATCTCTTCATACGGATGAGGATGAATCCATTGGCATATGGTATAGGATGGGATGAGGTGATGGCAGATCCTGGCTTAACGTCTAAGCAAAGATCTTTTGTAATTGATGCTGCACGTGCACTCGATAAAGCTAAAATGATGCGGTTTGATGAGAAAAGTGGCAATTTTTACTGTACTGAGCTTGGTCGCATTGCAAGCCATTTTTACATACAATATTCCAGTGTTGAAACATATAATGAAATGTTGAGACGCCACATGAGTGACAGTGAGGTGATTAGCATGGTTGCACATTCATCTGAATTTGAGAATATTGTTGTTCGAGAAGAAGAACAGAATGAGCTAGAGATGTTGGTTCGCTCATCATGTCCATTAGAAGTTAGGGGTGGTCCTTCCAATAAACATGGAAAGATATCCATTTTGATTCAGTTGTATATATCTCGAGGGTCTATAGATTCTTTTTCTTTGGTATCTGATGCTGCATACATAAGTGCAAGCTTAGCTCGTATAATGCGGGCTTTATTTGAGATTTGTCTGCGAAGGGGCTGGTGTGAAATGTCTTTGTTTATGTTGGAATATTGCAAAGCTGTGGATCGCCAAGTTTGGCCACACCAACATCCTCTTAGACAGTTTGATAAGGACATTTCTGGAGAGATATTGCGGAAGCTCGAAGAACGTGGGGCTGACCTAGATCGCCTGTTGGAGATGGAGGAAAAAGACATTGGGGCGTTAATTCGTTATGCACCTGGAGGAAAATTGGTCAAGCAATACCTGGGGTATTTTCCATCAATTCAGTTATCAGCGACAGTCAGTCCGATAACTAGAACTGTTCTGAAGGTTGATTTGGTGATAATGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGCTGGTGGATTTTGGTAGAGCCCCCNNNACTTTCCTTCACTGTGCCCATATTTGAACCACACCCGCCACAGTATTACATTCATGCTATTTCTGATTCTTGGCTTCAAGCAGAAGCATTCTACACTATTACTTTTCATAATTTACCATTGCCAGAGGCTAGGACTTCTCACACTGAACTCCTTGATTTAAAACCTCTTCCTGTGTCTTCCCTAGGCAATGTTGCTTATGAAGCGTTATATAGATTTTCACATTTTAATCCTATACAAACACAGATTTTTCATGTCTTGTATCACACGGACAATAATGTTCTATTAGGAGCTCCAACTGGAAGTGGTAAAACTATATCTGCTGAGCTTGCTATGCTTCATCTTTTCAACACGCAGCCTGATATGAAGGTTATTTATATAGCACCTTTGAAGGCTATTGTCAGGGAAAGAATGGGTGATTGGCAAAGGCGTCTTGTCTCTCAGCTAGGGAAAAAGATGGTTGAAATGACAGGAGACTATACACCAGATTTGATGGCCCTTTTGTCTGCAGATATCATCATATCTACCCCTGAAAAATGGGATGGTATCAGTCGTAATTGGCATACACGCAGCTATGTCACAAAGGTTGGACTCATGATATTGGATGAGATTCACTTATTGGGAGCTGATCGTGGACCCATACTTGAGGTTATTGTTTCTAGGATGAGATACATATCATCACAAACAGAGCGAGCAATAAGATTTGTTGGCCTCTCTACAGCTCTAGCAAATGCTGGTGATCTAGCTGATTGGTTAGGCGTTGAGGAGACTGGCCTCTTCAATTTCAAGCCAAGTGTGAGACCTGTACCTCTGGAGGTTCATATCCAGGCAAGTGGATATGGCTATCCTGGAAAGTATTATTGCCCAAGGATGAACAGTATGAATAAACCAGCGTATGCAGCAATATGCACACATTCACCTGCTAAACCTGTTCTTATATTTGTCTCTTCACGACGCCAGACAAGGCTGACTGCACTGGACCTAATTCAGTTTGCTGCCTCAGACGAGCATCCAAGGCAGTTCCTTGATATGCCAGAAGATGCACTGCAGATGGTTCTGTCCCAAGTCTCTGACCAAAACCTGAGGCATACTTTACAATTTGGTATTGGGTTACACCATGCAGGCCTGAATGACAAAGACAGATCATTGATACTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGGGTACAGAATACTATGATGGAAAATCAAAGAGGTATGTAGATTTTCCAATCACTGATATCTTGCAAATGATGGGTCGTGCTGGAAGGCCTCAGTTTGATCAGCATGGGAAAGCAGTGATTCTTGTTCATGAACCAAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCTTTTCCAGTTGAAAGTAGTCTGAGGGAGCACCTGCATGATCACCTCAATGCTGAAATTATTTCTGGAACCATTTGCAATAAACAAGATGCAGTGCACTACCTTACATGGACTTACTTATTCCGTAGACTGATGGTTAATCCTGCTTACTATGGATTGGAGAATGCCGACCCTGAATTTATCAGTTCATATCTGTCTAGTCTAGTACAGAGTACATTTGAGGACTTGGAAGACAGTGGATGCATAAAAATGAATGAAGACACTGTAGAATCAATGATGTTGGGTTCAATAGCATCTCAGTATTACCTAAGCTACATGACAGTATCAATGTTTGGTTCAAACATAGGTCCTGATACATCACTTGAAGTGTTTTTGCACGTCTTATCTGCTGCTTCCGAATTTGATGAACTCCCTGTGCGTCATAATGAGGAAAAATACAATGAAGGACTGTCTCAGAAAGTTAAATATCCAGTGGATAACAACCGTTTGGATGACCCCCATGTCAAAGCAAATCTTCTATTTCAGGCTCATTTCTCTCAGTTGGACTTACCAATTAGTGACTATGTCACGGACTTGAAGTCAGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGTGCAAACAGTGGTTGGCTTTCAAGCTCACTCACTTGCATGCATCTTCTGCAAATGGTCATGCAGGGGCTGTGGTTTGAAAAGGACTCTTCCTTATGGATGCTGCCATGCATGAATGCTGATCTAATGCAATCCCTTAGCAGAAGTGGAATTTCCAGTGTACAGGAATTACTAGATATTCCCAAGGCATCCTTGCAAAATGTAACAGGAAGTTTTCCGGCTTCAAGATTGTACCAGGACCTACAGCACTTCCCTCGTGTTAAAATGAAGTTAAAGCTTCAGAAGAAGGAAACTAATGGTGAGAGCTCTGATGCATTGTACATCAGATTGGAGAAGTCCAATTCTAGACGACACTCCTCTCGAGCATTTGTACCTCGATTTCCAAAGATAAAAGAAGAGCAGTGGTGGTTGGTTCTTGGTAATACCTCTACATCTGAGTTATATGCATTGAAGCGAGTGTCTTTTTCTGATCAGTTGGTTACCTTGATGAAGCTGCCTCATACACCATCCAACCTTAAGGGTATGAAACTCATATTAGTCTCAGATTGTTACATTGGATTTGAGCAAGAACACTCCATTGAAGGACTTATTGGAGGCCGGCATTAG 6180 0.4202 MLIQIPRFTNSLRNPFDVDQAYIHRKTLLHNQNPRNSANSLDESVLARKIVVGWEEASWEVRQAYKQFIGAVVELTDGEMRSEEFHEVALTVYRHFGRPMEDEDYLDRIIADKKLELQKLVGHAIADTKLRHVASLAQNLLNLQPSNKRPALSSERNLDDNEDLEFGADFVFQAPTRFLVDVSFDNVDMMDFRSTLPVSFHEEQYALTIPTDQSVDAEKFNLTWLREACDKIARNSNSQISRDELAMAICRVLNSEKPGEEIAGDLLDLAGDSAFETVQNLLLHRKEIVDSINHGLSVLKSDKNAPNSQSRMPSYGTQVIVQTESEKQIDKLRRKEEKRNRRGIEYGGDGDLSASDFSSLLQASERKNLFDDLIGSGDKSQSIAVTALPEGTARKHFKGYEEVTIPPKPTAPMKPGEKLIEIRELDDFAQAAFRGYKTLNRIQSRIFQTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSAFSQRLSPLNMVVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNADTGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYKKVVDSIRQGHQAMVFVHSRKDTTKTAEKLVELARRSEDLELFGNDTHPQFNLMKKEVIKSRNRNLVELFEYGMGVHHAGMLRADRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPGLTSKQRSFVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMSDSEVISMVAHSSEFENIVVREEEQNELEMLVRSSCPLEVRGGPSNKHGKISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMSLFMLEYCKAVDRQVWPHQHPLRQFDKDISGEILRKLEERGADLDRLLEMEEKDIGALIRYAPGGKLVKQYLGYFPSIQLSATVSPITRTVLKVDLVIMPVFIWKDRFHGTAQRWWILVEPXXLSFTVPIFEPHPPQYYIHAISDSWLQAEAFYTITFHNLPLPEARTSHTELLDLKPLPVSSLGNVAYEALYRFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMGDWQRRLVSQLGKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAIRFVGLSTALANAGDLADWLGVEETGLFNFKPSVRPVPLEVHIQASGYGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLDMPEDALQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLILVCTSTLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHDHLNAEIISGTICNKQDAVHYLTWTYLFRRLMVNPAYYGLENADPEFISSYLSSLVQSTFEDLEDSGCIKMNEDTVESMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHVLSAASEFDELPVRHNEEKYNEGLSQKVKYPVDNNRLDDPHVKANLLFQAHFSQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSLTCMHLLQMVMQGLWFEKDSSLWMLPCMNADLMQSLSRSGISSVQELLDIPKASLQNVTGSFPASRLYQDLQHFPRVKMKLKLQKKETNGESSDALYIRLEKSNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKRVSFSDQLVTLMKLPHTPSNLKGMKLILVSDCYIGFEQEHSIEGLIGGRH 2059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02873 2059 Gene3D C2 domain 1943 2053 IPR035892 -
Aip10g02873 2059 Pfam DEAD/DEAH box helicase 1266 1430 IPR011545 GO:0003676|GO:0005524
Aip10g02873 2059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 623 IPR027417 -
Aip10g02873 2059 PIRSF BRR2 1186 2057 - -
Aip10g02873 2059 PIRSF BRR2 16 1189 - -
Aip10g02873 2059 CDD DEXHc_ASCC3_2 1263 1451 - -
Aip10g02873 2059 SMART helicmild6 726 818 IPR001650 -
Aip10g02873 2059 SMART helicmild6 1547 1624 IPR001650 -
Aip10g02873 2059 Gene3D - 848 938 IPR036388 -
Aip10g02873 2059 Gene3D C2 domain 1141 1187 IPR035892 -
Aip10g02873 2059 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 469 2052 - -
Aip10g02873 2059 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 428 468 - -
Aip10g02873 2059 CDD SF2_C_Ski2 638 829 - -
Aip10g02873 2059 Pfam Sec63 Brl domain 939 1222 IPR004179 -
Aip10g02873 2059 SUPERFAMILY Sec63 N-terminal domain-like 1773 1928 - -
Aip10g02873 2059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 846 IPR027417 -
Aip10g02873 2059 Gene3D C2 domain 1188 1227 IPR035892 -
Aip10g02873 2059 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 863 IPR001650 -
Aip10g02873 2059 SMART ultradead3 1260 1464 IPR014001 -
Aip10g02873 2059 SMART ultradead3 435 646 IPR014001 -
Aip10g02873 2059 Gene3D - 639 841 IPR027417 -
Aip10g02873 2059 PANTHER SEC63 DOMAIN-CONTAINING 469 2052 - -
Aip10g02873 2059 Gene3D - 1748 1884 - -
Aip10g02873 2059 Gene3D - 1456 1653 IPR027417 -
Aip10g02873 2059 SUPERFAMILY "Winged helix" DNA-binding domain 846 951 IPR036390 -
Aip10g02873 2059 SMART Sec63_2 939 1224 IPR004179 -
Aip10g02873 2059 SMART Sec63_2 1740 2053 IPR004179 -
Aip10g02873 2059 Pfam Helicase conserved C-terminal domain 671 816 IPR001650 -
Aip10g02873 2059 Gene3D - 1229 1455 IPR027417 -
Aip10g02873 2059 Gene3D - 427 638 IPR027417 -
Aip10g02873 2059 CDD SF2_C_Ski2 1455 1636 - -
Aip10g02873 2059 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 448 630 IPR014001 -
Aip10g02873 2059 PANTHER SEC63 DOMAIN-CONTAINING 428 468 - -
Aip10g02873 2059 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1483 1681 IPR001650 -
Aip10g02873 2059 Pfam Sec63 Brl domain 1741 2051 IPR004179 -
Aip10g02873 2059 SUPERFAMILY "Winged helix" DNA-binding domain 1652 1752 IPR036390 -
Aip10g02873 2059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1187 1448 IPR027417 -
Aip10g02873 2059 Gene3D - 1084 1138 - -
Aip10g02873 2059 Pfam DEAD/DEAH box helicase 441 614 IPR011545 GO:0003676|GO:0005524
Aip10g02873 2059 CDD DEXHc_ASCC3_1 438 634 - -
Aip10g02873 2059 Gene3D - 940 1082 - -
Aip10g02873 2059 SUPERFAMILY Sec63 N-terminal domain-like 967 1142 - -
Aip10g02873 2059 SUPERFAMILY E set domains 1962 2051 IPR014756 -
Aip10g02873 2059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1450 1652 IPR027417 -
Aip10g02873 2059 SMART AAA_5 1278 1515 IPR003593 -
Aip10g02873 2059 SMART AAA_5 453 634 IPR003593 -
Aip10g02873 2059 Coils Coil 1100 1120 - -
Aip10g02873 2059 Gene3D - 1654 1747 IPR036388 -
Aip10g02873 2059 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1273 1448 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02873 Aip-Chr10 122678740 122700893 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02873 K18663 - gmx:100811503 3675.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02873 10 122678740 122700893 Aip10g02873 10 122678740 122700893 ECH