Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02787 ATGGCATCAGAATACGATGATCAACTCAGTTGTTTACGTGAAATCTTTTCAAGATTCGACATGGACAACGACGGTAGCTTAACGATTCTAGAACTCGCCGCGCTCTTGCGTTCTCTAGGGATCAATCCCATGGGGAACCAGATCCATTTGTTGTGGACGAACATGGACGTTAACGGCAATGGCTACGTGGAATTTGATGAGTTAGCTTCAGCAATCTTGCCAGATCTGAAGAACGAGGACGAAGATTATTTGTTAAGAGATCATCATGCATTGCTCCTAACTGTCTTCAATTCATTCGATCACGACAGCGATGGATACATATCGGCGCTGGAGCTGGCGACGGAGATGGCAAAGATAGGGCAGCCGCTCACGTATGGGGAGCTCAGGGAGATGATCACGGCGGCCGGAGACGACGGAGACGGTGCCATTTGTTTCAATGAATTTGCTTCTGTTATGATTAGGTCAAAATCTGGATTGTTGGGTCTTGCATTGTTGTTGTCCGGAGATGAGTAA 513 0.4698 MASEYDDQLSCLREIFSRFDMDNDGSLTILELAALLRSLGINPMGNQIHLLWTNMDVNGNGYVEFDELASAILPDLKNEDEDYLLRDHHALLLTVFNSFDHDSDGYISALELATEMAKIGQPLTYGELREMITAAGDDGDGAICFNEFASVMIRSKSGLLGLALLLSGDE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02787 170 Pfam EF hand 95 114 IPR002048 GO:0005509
Aip10g02787 170 Gene3D - 1 83 - -
Aip10g02787 170 PANTHER CALCIUM BINDING PROTEIN 7 163 - -
Aip10g02787 170 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 7 163 - -
Aip10g02787 170 CDD EFh 95 152 IPR002048 GO:0005509
Aip10g02787 170 SMART efh_1 47 75 IPR002048 GO:0005509
Aip10g02787 170 SMART efh_1 11 39 IPR002048 GO:0005509
Aip10g02787 170 SMART efh_1 91 119 IPR002048 GO:0005509
Aip10g02787 170 SMART efh_1 127 155 IPR002048 GO:0005509
Aip10g02787 170 Gene3D - 84 159 - -
Aip10g02787 170 CDD EFh 12 72 IPR002048 GO:0005509
Aip10g02787 170 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Aip10g02787 170 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Aip10g02787 170 ProSiteProfiles EF-hand calcium-binding domain profile. 123 158 IPR002048 GO:0005509
Aip10g02787 170 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Aip10g02787 170 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Aip10g02787 170 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Aip10g02787 170 Pfam EF-hand domain pair 116 152 IPR002048 GO:0005509
Aip10g02787 170 Pfam EF-hand domain pair 12 71 IPR002048 GO:0005509
Aip10g02787 170 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Aip10g02787 170 SUPERFAMILY EF-hand 6 154 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02787 Aip-Chr10 119894310 119895409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02787 6 164 EF-hand Containing Proteins AT1G18530 59.119 4.19e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02787 K13448 - cpap:110820455 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02304 01 121130698 121131696 Aip10g02787 10 119894310 119895409 ECH
Aip10g02787 10 119894310 119895409 Aip10g02787 10 119894310 119895409 ECH