Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02742 atgtttactcttgcttatgtgaagcttggTGCAGTTTCCTGGTGTGGAAAACTGAATGCTATAGCTTGTTCCTCTGAAACATGTGCTAGAATTCCCAGCTCAACTGCAAATCCACCATTTTGGATCCCTATACATATTGTGATCCCAGAGAGGCCTACTGAATATTCTCCTCGTGATTTTGTACAGTTTATTGAGTGGTCCCCTACTTCTTGTCCCTGTGCATTATTGATAGCTAATTTTCATGGGAGGGTAACTATTTGGACTCAACCATCTCAAGTAAGTGAGGGTTACATAAGTGGGAAATTTATAAACATGGCTGATGAGATTGTTTCTGAGACTCCTGTTCAAGCTTCTGGTAGTGTTGATTCTGGTAAAAAATCTAATGTTTGGAGGTTTTTTAAGAAGATTGGAAAAGACAGAGATGATCCTTCAACCTTTGAATTGAAGGCAAATGAAGTATTGGAGAAATTTAAAAGGTTGTATGGAGAGTACATAAATACTTTTGGTGGTTCAACAATTTCTCAAAGTAGTAATCAATCTCCTATGTCACCTGAAGAAGGAAGGCTTACAAAGAAGAGCAAAATGGTGATGAAGGAGTTCAGAGAATTTGATTGTGAAACCCAAACTTTCAAGGATAAAGATGAATTAGAGATTTATCTAAAAGAAGTCTTTGCTTTAAGCGCCTCCATTCTCATCCCCCGTCCGCGATTCACGACCATTGCCTCAAGCTGCGTCGTCTCTCCGTTTCGTGAGTTTTTCCCAACAGGAGCCATGGCTACAACTCATCTTGCTGCAACAACAGAGTCACTTGCTCTTGCTGTTGAGGCCAAAGACCCATCTGAGGCTATTTCTATTCTTTATCGTGTACTTGAGGATCCTTCTTCCTCACCCGAAGCTCTGCGTATGAAAGAGCAGGCGATCACAAACCTTACTGACCTTCTAAGGCAAGAGAATAGAGGAGAGGATCTACGCAGCCTTCTCACACAATTGAGGCCCTTTTTCTCCGTGATACCCAAGGCAAAAACTGCAAAGATAGTTAGGGGGATAATTGACGCAGTTGCTAAAATCCCAGGGACATCTGATCTTCAAATTGTGCTTTGCAGAGAAATGGTGCAGTGGACTTATGCTGAGAAGCGTACATTCCTGAGGCAGCGAGTTGAGGCAAGACTTGCAGCACTTCTGATGGAAAATAAGGAGTACTCAGAAGCTTTGACTCTTCTGTCAAGCTTGATCAAAGAGGTTAGAAGATTAGATGACAAGCTTCTACTCGTAGACATAGACTTGCTGGAAAGCAAACTACACTTCTCATTAAGAAACCTTCCAAAGGCGAAAGCCGCGCTAACTGCAGCAAGAACTGCTGCTAATGCCATTTATGTGCCTCCGGCACAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAGGAGAAGGATTATAAAACTGCATATAGTTATTTCTTTGAAGCTTTCGAGTCTTTCAATGCACTTGAAGACCCAAAGGCTGTTTTCAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTAAATCAAGCTGATGACGTTGGCGGGATCATATCTTCTAAAGCCGGGTTGCAATATGTTGGCCCTGACTTGGATGCAATGAAAGCTGTTGCAGATGCTCATTCTAAGCGATCCCTGAGATTGTTCGAGATTGCTCTGCGGGACTACAATGCACAGTTGGAGGAAGACCCAATCGTCCATAGGCACTTACAATCCTTGTATGATACCCTCTTGGAACAGAATCTTTGCAGGTTGATCGAGCCGTTCTCAAGGGTTGAGATTGCGCACATTGCTGAGCTCATTGAACTGCCTATGGATCACGTGGAGCGGAAGTTGTCTCAGATGATCTTGGACAAGAAGTTTGCGGGGACATTGGATCAAGGTGCCGGATGCCTCGTCATATTTGACGACCCCAAGACCGACGCGATATATCCTGCAACTCTGGAGACCATTTCCAATATTGGGAAAGTTGTCGATAGTCTTTATGCTAGGTCTGCCAAGATAATGGCATGA 2040 0.4265 MFTLAYVKLGAVSWCGKLNAIACSSETCARIPSSTANPPFWIPIHIVIPERPTEYSPRDFVQFIEWSPTSCPCALLIANFHGRVTIWTQPSQVSEGYISGKFINMADEIVSETPVQASGSVDSGKKSNVWRFFKKIGKDRDDPSTFELKANEVLEKFKRLYGEYINTFGGSTISQSSNQSPMSPEEGRLTKKSKMVMKEFREFDCETQTFKDKDELEIYLKEVFALSASILIPRPRFTTIASSCVVSPFREFFPTGAMATTHLAATTESLALAVEAKDPSEAISILYRVLEDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTQLRPFFSVIPKAKTAKIVRGIIDAVAKIPGTSDLQIVLCREMVQWTYAEKRTFLRQRVEARLAALLMENKEYSEALTLLSSLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLRLFEIALRDYNAQLEEDPIVHRHLQSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPMDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYARSAKIMA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02742 679 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 259 679 - -
Aip10g02742 679 SUPERFAMILY "Winged helix" DNA-binding domain 571 653 IPR036390 -
Aip10g02742 679 Coils Coil 383 403 - -
Aip10g02742 679 ProSiteProfiles PCI domain profile. 480 648 IPR000717 -
Aip10g02742 679 SUPERFAMILY TPR-like 388 580 IPR011990 GO:0005515
Aip10g02742 679 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 259 679 - -
Aip10g02742 679 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 577 660 - -
Aip10g02742 679 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 650 675 IPR040780 -
Aip10g02742 679 Pfam PCI domain 542 643 IPR000717 -
Aip10g02742 679 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 273 385 IPR040773 -
Aip10g02742 679 Gene3D - 303 678 - -
Aip10g02742 679 SMART PINT_4 577 660 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02742 Aip-Chr10 118599245 118617538 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02742 K03036 - gmx:100780845 732.635