Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02735 ATGGAGAAGCTAGGGTTAGGGTTTGATTTGGTTCCGAACAATAATCTCATTGATATGTACGCAAAATGTGGCACTATGAAATTGGCATGTTTGGTGTTTGATAAAATGCCACAAAGAAATGTGGTGTCTTGGACGGCTCTGATGTGTGGTTATTTGCAAAATGGTGATCCCAATGCCTCTTTAGTGTTATTCTCTAAAATGGGGCTATCTAGTATTAAGCCTAATGAGTTCACACTTTCTACTGCTCTAAAAGCTTCAACGGTTTTGGGTGTACCTCAGAATGGAATGCAGATTCATGGGGTTTGTGCAAAATCCAATCTTGATTTTGCGCCTGTCGTGGGAAATTCGATTATTGACATGTATTCCAAGTGGGGACGGGTTGGCGAGGCAGCTAAGATGTTCGATGCTATGCCAGTGAGGAACCTTGTGAGTTGGAATGCAATGATTGCCGGATACACCCATGAGAGAAATGGTGAAGGGGCTTTGAATCTGTTTAGGGAGATGCAAGAAAAGGGAGAAGTTCCTGATGAATATACATATTCAAGTACTTTAAAGGCATGTAGTTGTGTTGGCATGGTCGCTGAAGGATCGCAAATACATGCTGCCTTAATCAGACAAGGATCTTCATACTTGGCTCAATCAACTGTCGCAGGTGCTCTGGTTGATTTTTATGTCAAATGCAGACACACAGCCAAAGCTAGGAAGGTGTTCGATCAAATTGAACATAAGAATGTGGTACCTTGGAGCACACTTATTCTTGGCTATGCTCAAGAAGACAATTTGCAAGAGTCCATAAACTTGTTTCATCAGTTGAGAGAGAGCAGACATAAGGTGGATGGGTTTGTGCTCTCAAGTCTCATAGGTGTGTTTGCTGATTTCGCCCTTGTGTTGCAGGGGAAGCAAATGCACGCTTACGCCATCAAAGTACCATTCGGATTAGAAGCATCAGTGGCAAATTCAGTTTTAGATATGTACATGAAATGCGGATTAACAGACGAGGCAGATGCACTTTTCAGAGAGATGCCAACAAGGAATGTTGTTTCGTGGACGGTTATGATTACTGGTTACGGTAAACATGGTATAGGTTACAAGGCAGTTAAACTTTTCGCCGAAATGCAAGTTCATGGAATCGAACCTGACAGTGTGACATACTTAGCTGTGCTCTCAGCTTGCAGCCATACAGGACTCATCAAAGAAGGACAACAATACTTCTCCAGTTTCCTTAGCAATCCCCATTTCAAACCACAAGTAGAGCATTATGCTTGCATGGTTGATCTCCTTGGACGTGCCGGGCGCTTAAACGACGCGAAGGAGCTCATTGAGACGATGCCCTTGAAGCCAAATACCGGTATATGGCAGACACTACTTAGTGCTTGTAGAATGCATGGGGAGATGGAGATGGGTGAAAAAGTGGGAGAGATATTATTGAGAATGGATGGTAATAATCCAGTGAACTATGTCATGTTGTCAAACATGTATGCTGATGCAGGATATTGGAATGAAAGCGAGAAGATAAGAGAGAAAGTGAAGAGGAAGGGATTGAAGAAAGAGGCGGGGCGAAGTTGGGTAGAAATAAATAAGGAAATCCACATTTTCTTCAATGGAGATAGCACACATACACTCATAGAGAAGATTCATCAAGTGTTGAGAGAAATGGAGAAGAGGATGAAGGAGGAAATAGGGTATGTTCATAATATGAATTTTGCATTGCATGATGTTGAAGAGGAATCAAAGGTGGAGAGTTTGAGGTACCATAGTGAGAAATTGGCTATTGGATTGGTTTTGGTCAGTGGTGGGGTAAAAGGAGAGAGGATGGTTAGGATTTTCAAGAATTTGAGGGTTTGTGGTGACTGCCATACCTTCATCAAGGGTCTCTCTAAGGTTTTGAAGATTGTATTTGTGGTGAGAGATGCAAATAGGTTCCACAGATTTGAGAACGGTCTATGTTCTTGTGGAGATTATTGGTAA 1968 0.4217 MEKLGLGFDLVPNNNLIDMYAKCGTMKLACLVFDKMPQRNVVSWTALMCGYLQNGDPNASLVLFSKMGLSSIKPNEFTLSTALKASTVLGVPQNGMQIHGVCAKSNLDFAPVVGNSIIDMYSKWGRVGEAAKMFDAMPVRNLVSWNAMIAGYTHERNGEGALNLFREMQEKGEVPDEYTYSSTLKACSCVGMVAEGSQIHAALIRQGSSYLAQSTVAGALVDFYVKCRHTAKARKVFDQIEHKNVVPWSTLILGYAQEDNLQESINLFHQLRESRHKVDGFVLSSLIGVFADFALVLQGKQMHAYAIKVPFGLEASVANSVLDMYMKCGLTDEADALFREMPTRNVVSWTVMITGYGKHGIGYKAVKLFAEMQVHGIEPDSVTYLAVLSACSHTGLIKEGQQYFSSFLSNPHFKPQVEHYACMVDLLGRAGRLNDAKELIETMPLKPNTGIWQTLLSACRMHGEMEMGEKVGEILLRMDGNNPVNYVMLSNMYADAGYWNESEKIREKVKRKGLKKEAGRSWVEINKEIHIFFNGDSTHTLIEKIHQVLREMEKRMKEEIGYVHNMNFALHDVEEESKVESLRYHSEKLAIGLVLVSGGVKGERMVRIFKNLRVCGDCHTFIKGLSKVLKIVFVVRDANRFHRFENGLCSCGDYW 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02735 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Aip10g02735 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Aip10g02735 655 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 3 613 - -
Aip10g02735 655 Pfam DYW family of nucleic acid deaminases 561 655 IPR032867 GO:0008270
Aip10g02735 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Aip10g02735 655 TIGRFAM PPR: pentatricopeptide repeat domain 143 177 IPR002885 -
Aip10g02735 655 TIGRFAM PPR: pentatricopeptide repeat domain 319 347 IPR002885 -
Aip10g02735 655 TIGRFAM PPR: pentatricopeptide repeat domain 347 381 IPR002885 -
Aip10g02735 655 TIGRFAM PPR: pentatricopeptide repeat domain 115 141 IPR002885 -
Aip10g02735 655 TIGRFAM PPR: pentatricopeptide repeat domain 42 76 IPR002885 -
Aip10g02735 655 Pfam E motif 462 524 IPR046848 -
Aip10g02735 655 Pfam PPR repeat family 344 392 IPR002885 -
Aip10g02735 655 Pfam PPR repeat family 39 85 IPR002885 -
Aip10g02735 655 Pfam PPR repeat family 141 187 IPR002885 -
Aip10g02735 655 PANTHER - 3 613 - -
Aip10g02735 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 40 74 IPR002885 -
Aip10g02735 655 Gene3D Tetratricopeptide repeat domain 215 309 IPR011990 GO:0005515
Aip10g02735 655 Gene3D Tetratricopeptide repeat domain 411 588 IPR011990 GO:0005515
Aip10g02735 655 Gene3D Tetratricopeptide repeat domain 311 410 IPR011990 GO:0005515
Aip10g02735 655 Gene3D Tetratricopeptide repeat domain 1 90 IPR011990 GO:0005515
Aip10g02735 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Aip10g02735 655 Pfam PPR repeat 420 443 IPR002885 -
Aip10g02735 655 Pfam PPR repeat 247 274 IPR002885 -
Aip10g02735 655 Gene3D Tetratricopeptide repeat domain 91 214 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02735 Aip-Chr10 118442946 118444937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02735 9 655 Glycoside Hydrolase AT3G49170 38.695 2.26e-157 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02735 - - gmx:100806657 1054.28