Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02570 ATGGCTGAGGCAGTAAGAAAAGCCACAACTCACCCATCTTCAAACGTTTCTTCCGTCGTAGCTTCCATTACATCACTGATTCAAACCATAAACCCCCAAAACCCAAATGCCTGTGAAGCACTGAAACCATTCTCCCCTTACCTCACTCAACCATTGGTCATCCAAGTCATCAAGAACTTACGCAGTCCCAACCACGCACTATTCTTCTTCAACTGGGCCTCCAACCCGCAACCCAACCCCAACAACTACTCTCACACGCGCCACTGTTACGCCGCCATAACCGACTCCCTTCTCTCTCACTCTCTCTTCTCCACCGCCCACCACCTCCTCCACCGCTCCAACAACCTCTCCGACTCCTTGATTTGCAAATTCATCATTGCTCTCGGCAATCGCGGCGATATCAGGGGCGCCATTCACTGGTTCCACAAAGCCAAGAGCTTTTCACATGGCCGATGCTTGTTATCCTGTAACGCCGTCTTGGGTGTTCTTGTAAGAGCCAATCGGATCAATTTGTCAAAGTCTATCTTTGACCAGGTTGTGGAGGAGGGTGTGTTTGAGCTCGACGTGTTCACTTATACCACCATGATTAGGGGCTTCTGCAAAATAGGCATGGTCCACAGTGCACTCAAGGTGTTCGATGAAATGCGCTGTTCGCCCAATTCGGTTACTTACAACACTTTGATTCACGGGTTTTGCAAGAACCGTGATATGGAGGGTGCCAAGAGGGTTTTTGATAGAATGGTGGAAGTAGGGGGTCAGAGTTGCAAGCCGGATGTGGTGACTTATACTACTTTAATTGATGGATATTCAAAGAAAGGTGAGTTCCGCGAAGCTTTAGAGTGTATGGAAGAGATGGTAAAACAGGGTTGTCATCCAAATGTGTTGACCTACAATGCGTTGATTGAAGGCCTTTGCTTGGGTGGGAATGTGGACGAGGCCATGAAGATGATGACTAGGATGCGATTGAATGGTTTAGAAGACAATGTTACCACAAACACCAGCATCATCAAGGGTTTTTGCACTGTGGGAAGGTCTGAAGAAGCTATCATGCATCTGAAGGAAATGGATAGTCGCGGGATGAGGCCGGATTTGAAGGCTTACAGTGTCATAGTCAATGAGTATTGCAAAATTAGGAAACCAGATGATGCCCTTTTACTTATAAGGGAGATGGTGGTCAAGGGAATCAAGCCATCTGTGTCAAGTTTTAATGCAGTGTTTAGAGTTCTTGTGGATATAGGGAAGCTGGATGAAGCAGTTCATCTTTTGAAGCAGATGCCTCAAATGGGCTGCATACCCAACTTCTTATCATATAGCATAGTGATCTGTGGTCTTTGTAAAGTGAATGGTAGGATGCAAGAAGTTGAAGGGCTTGTATCTGAGATGCTTGAGAACGGCCATGACCTTGATACCACCTTGTACAATTGCTTGCTTGGGGGATATTGTGATCTTGGGGATGAGGAAATGGCATTGAGGACTGTCTATGACATGATTGATAAGAACTTTGTAATCAACAAAGACACATTCTGCATTTTTGTCAAGGACTTGCGTGGAAAGGGAAAACTTAGCAAGGCAGTGACTGTTGTTGAAGAGATGTGCAGGAGATGCAATGTACCTGATATAAATTCTTACAGAGCGTTACTCTAG 1644 0.4574 MAEAVRKATTHPSSNVSSVVASITSLIQTINPQNPNACEALKPFSPYLTQPLVIQVIKNLRSPNHALFFFNWASNPQPNPNNYSHTRHCYAAITDSLLSHSLFSTAHHLLHRSNNLSDSLICKFIIALGNRGDIRGAIHWFHKAKSFSHGRCLLSCNAVLGVLVRANRINLSKSIFDQVVEEGVFELDVFTYTTMIRGFCKIGMVHSALKVFDEMRCSPNSVTYNTLIHGFCKNRDMEGAKRVFDRMVEVGGQSCKPDVVTYTTLIDGYSKKGEFREALECMEEMVKQGCHPNVLTYNALIEGLCLGGNVDEAMKMMTRMRLNGLEDNVTTNTSIIKGFCTVGRSEEAIMHLKEMDSRGMRPDLKAYSVIVNEYCKIRKPDDALLLIREMVVKGIKPSVSSFNAVFRVLVDIGKLDEAVHLLKQMPQMGCIPNFLSYSIVICGLCKVNGRMQEVEGLVSEMLENGHDLDTTLYNCLLGGYCDLGDEEMALRTVYDMIDKNFVINKDTFCIFVKDLRGKGKLSKAVTVVEEMCRRCNVPDINSYRALL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 468 IPR002885 -
Aip10g02570 547 Pfam PPR repeat family 397 446 IPR002885 -
Aip10g02570 547 Pfam PPR repeat family 328 376 IPR002885 -
Aip10g02570 547 Pfam PPR repeat family 257 305 IPR002885 -
Aip10g02570 547 Pfam PPR repeat 472 501 IPR002885 -
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Aip10g02570 547 Gene3D Tetratricopeptide repeat domain 18 216 IPR011990 GO:0005515
Aip10g02570 547 Gene3D Tetratricopeptide repeat domain 321 389 IPR011990 GO:0005515
Aip10g02570 547 Gene3D Tetratricopeptide repeat domain 390 547 IPR011990 GO:0005515
Aip10g02570 547 Gene3D Tetratricopeptide repeat domain 217 320 IPR011990 GO:0005515
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Aip10g02570 547 Pfam PPR repeat 217 248 IPR002885 -
Aip10g02570 547 Pfam PPR repeat 186 216 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 190 218 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 222 251 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 260 294 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 333 363 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 401 433 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Aip10g02570 547 TIGRFAM PPR: pentatricopeptide repeat domain 296 325 IPR002885 -
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Aip10g02570 547 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 540 - -
Aip10g02570 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 3 540 - -
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Aip10g02570 547 SUPERFAMILY HCP-like 130 320 - -
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Aip10g02570 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02570 Aip-Chr10 113347633 113349280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02570 188 547 Glycosyltransferase AT1G05670 30.579 1.28e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02570 - - aprc:113866240 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02570 10 113347633 113349280 Aip10g02570 10 113347633 113349280 ECH