Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02523 ATGATGCGATCCACTTCCATTCTCTTGCTCTCCAAACCTTCCCTTTTCCCTTCTTCCTTCTCATTTCCCACCACCTCCCTGTCTCAATGGTTTTCCCTTCTCCGCCACGCCATCGCCACCTCCGACCTCCTCCTCGGAAAACGTGGCCACGCCCTCATCATAACCTCCGGCCACCACCATGACCCTTTCCTTGTCAACAACCTCATCACCATGTACGGCAAATGCGGCTCCCTCTCCTGCGCTCGCCACCTGTTCGACGTAATTCCCCACAGAGACCTTGTCACCTGGAATGCCATTCTCTCTGCATACGCCCAAGCCGGTGATGCTGACATTGTCAATGCTCATGAGGGTTTTCGCCTTTTCCGTGTTCTCCGCGAGTCCTTTGTGTTAACCACTCGTCATACTCTGGCCCCTGTGTTCAAGTTATGCCTCCTTTCTGGGTGTGAATGGGCTTCTCAGGTGCTTCATGGCTATGCGGTTAAGATTGAGTTGGAATGGGATGTGTTTGTGGCTGGGGCATTGGTCAATATATATGCTAAATTTGGGAGGATCAGAGATGCCCGTGTTCTGTTTGATGGGATGCCCGTGAGGGATGTGGTCTTGTGGAACGTCATGATCAAGGCTTATGTTGAAATGGGTCTTCAGCATGAAGCTTTGTTTCTCTTCTCGGCGTTTCACAGGAGTGGCCTGTGTCCTGATGATGTTACTGTCCGGAGTGTTCTTATGGGTGTTAGTAGAACTGGTTTTGAATTGCAGTTGAAGCAGGTTCGAGCTTATGCTACAAAGTTGTTCCTTCTGGATCATGATTGGGAGGTTGTCATATGGAACAAGACACTTAGTGACTATCTTCAAGCTGGAGAGACTACGGAGGCTATTGAATGCTTCATGGATATGATCAAATTGCGGGTAGCATATGACAACATGACATTACTCGTGATGCTATCTGTGGTTGCAAGTGAAAAGAATATCAATATGGGAAAACAGATTCACGGTGTTGTTGTGAAAATGGAGTCTGATCGTGTTGTATCAGTTGCAAACAGTCTTCTTAATATGTACATGAAGGCAGGTTCTATCGATTATGCGAAAATCGTGTTTAGTCAAATGAAAGAAAAGGATTTAATATCATGGAACACAATTATATCTGGTTGTACGCGGGGTGGTTCAGTGGAGTTGTCCATAAGCTTCTTTGTTAATTTACTACGCAGTTGCCTATTGCCGGACCAATTCACAATTGCAAGTGTTTTGAGGGCTTGCTCTTCTCTTAAAGAAGGCGTCTATTTCAGTAGACAAATTCATACTTATGCAATAAAAGCTGGTATCATCTATGATTCGTTTGTTTCAACAGCTTTAATTGATGCCTATTCCAAGAGTGGAAAGATGGAAGAGGCAGAACTTCTTTTTAGAATCCATGATGGATTTGATTTGGCTTCTTGGAACGCTATGATGCATGGGTACATAGTGAGTAAGTGCTATCACAAAGCATTGGAGCTTTTCATTCAAATGCATGGAAGTGGTGAGCAGGGAGATCAGATTACTCTGGCAAATGCAGCTAAAGCCGCTGGATGCTTGGTGGGGCTTGAACAAGGGAAGCAGCTTCACGCCATTGCCATAAAAAGGATATTTAATTTAGATTTGTTTGTTATAAGCGGGATTCTGGACATGTATCTAAAATGTGGAGAGATGGAAAGCGCATGCAAAGTTTTCAGTAAGATCCCTTCACCTGATGATGTTGCATGGACAACTATGATATCGGGATGCGTGGATAATGGATATGAGGAGCATGCTCTTTTTACATATCATCAGATGAGACTTGCCGGTGTGCAACCTGACGAGTATACCTTTGCCACCCTTGTCAAGGCTAGCTCTCTTCTAACAGCATTGGAACAAGGGAGGCAGATTCATGCTAATGTTATCAAGTTGAACTGTGCTTTAGATCCTTTTGTTATGACCTCACTTGTTGACATGTATGCCAAGTGTGGGAACATAGAAGATGCCTATAGATTGTTCAAAAAAATGAACATGAAGAGCATCGCCTCGTGGAATGCTATGATAGTTGGATTAGCTCAACACGGAAATGCAAAGGAGGCCCTCAACCTTTTCAAAGATATGAAGTCTAAGGATGAAATGCCTGACAGAGTTACCTTTATAGGAGTCCTTTCTGCTTGTAGCCATTCTGGTTTGGTTTCTGAAGCATATGAAAATTTCTATTCTATGCAAAGAGACCACAGAATTGAACCCGAGATTGAGCATTATTCCTGTCTTGTTGATGCCCTTAGCCGTGCAGGGCGCATTAAGGAAGCTGAAAAGGTTATATCATCGATGCCCTTTGAAGCTTCTGCTTCAATGTACAGGACTCTCCTAAATGCTTGTAGGGTTCAGGGAGACAAGGTGAAGGGAAAACATGTTGCCGAGACGCTTTTGACCTTGGAGCCGTCTGATTCAGCAGCTTATGTTCTTTTATCCAATATATATAGAGCTGCTAATCAATGGGAAAGTGCAGTGAGTGCTAGAAATATGATGAGAAGGGTAAATGTAAAGAAGGATCCAGGCTTTAGTTGGATAGATATAAAGAACAAGGTTCATTTGTTTGTAGCAGGAGATAGATCACATGAAGAAGCTGATTTGATATACAATAAGGTGGATCATATTATGAAAAGGATTAAGGAAGAAGGATATGTCCCTGATACAGATTTTGCACTTGTTGATATTGAAGAAGAAGAAAAGGAGAGTGCTCTTTATTATCACAGTGAGAAGCTAGCAATAGCTTATGGTATCGTAAGAACACCACCATCCATCCCATTAAGGGTGGGGGAACAGCTTGCAGAGATATGGTTTGGAGACCTTGAGAGCTTATGGGAGGATTTAGAAACAAGCCATGCTGGTGACATTGGCTTGGCTTGGATGCAGTGGAAGTGGATCTTTGAATGTTCGGCCGGATAA 2940 0.435 MMRSTSILLLSKPSLFPSSFSFPTTSLSQWFSLLRHAIATSDLLLGKRGHALIITSGHHHDPFLVNNLITMYGKCGSLSCARHLFDVIPHRDLVTWNAILSAYAQAGDADIVNAHEGFRLFRVLRESFVLTTRHTLAPVFKLCLLSGCEWASQVLHGYAVKIELEWDVFVAGALVNIYAKFGRIRDARVLFDGMPVRDVVLWNVMIKAYVEMGLQHEALFLFSAFHRSGLCPDDVTVRSVLMGVSRTGFELQLKQVRAYATKLFLLDHDWEVVIWNKTLSDYLQAGETTEAIECFMDMIKLRVAYDNMTLLVMLSVVASEKNINMGKQIHGVVVKMESDRVVSVANSLLNMYMKAGSIDYAKIVFSQMKEKDLISWNTIISGCTRGGSVELSISFFVNLLRSCLLPDQFTIASVLRACSSLKEGVYFSRQIHTYAIKAGIIYDSFVSTALIDAYSKSGKMEEAELLFRIHDGFDLASWNAMMHGYIVSKCYHKALELFIQMHGSGEQGDQITLANAAKAAGCLVGLEQGKQLHAIAIKRIFNLDLFVISGILDMYLKCGEMESACKVFSKIPSPDDVAWTTMISGCVDNGYEEHALFTYHQMRLAGVQPDEYTFATLVKASSLLTALEQGRQIHANVIKLNCALDPFVMTSLVDMYAKCGNIEDAYRLFKKMNMKSIASWNAMIVGLAQHGNAKEALNLFKDMKSKDEMPDRVTFIGVLSACSHSGLVSEAYENFYSMQRDHRIEPEIEHYSCLVDALSRAGRIKEAEKVISSMPFEASASMYRTLLNACRVQGDKVKGKHVAETLLTLEPSDSAAYVLLSNIYRAANQWESAVSARNMMRRVNVKKDPGFSWIDIKNKVHLFVAGDRSHEEADLIYNKVDHIMKRIKEEGYVPDTDFALVDIEEEEKESALYYHSEKLAIAYGIVRTPPSIPLRVGEQLAEIWFGDLESLWEDLETSHAGDIGLAWMQWKWIFECSAG 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02523 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 675 IPR002885 -
Aip10g02523 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Aip10g02523 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Aip10g02523 979 PANTHER - 226 939 - -
Aip10g02523 979 PANTHER - 45 248 - -
Aip10g02523 979 Pfam PPR repeat 173 197 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 649 675 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 200 229 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 750 774 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 346 372 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 448 468 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 94 110 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 477 505 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 273 302 IPR002885 -
Aip10g02523 979 Pfam PPR repeat 374 400 IPR002885 -
Aip10g02523 979 Pfam E motif 798 855 IPR046848 -
Aip10g02523 979 Pfam DYW family of nucleic acid deaminases 891 940 IPR032867 GO:0008270
Aip10g02523 979 Pfam PPR repeat family 574 620 IPR002885 -
Aip10g02523 979 Pfam PPR repeat family 676 723 IPR002885 -
Aip10g02523 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Aip10g02523 979 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 226 939 - -
Aip10g02523 979 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 45 248 - -
Aip10g02523 979 Gene3D Tetratricopeptide repeat domain 625 702 IPR011990 GO:0005515
Aip10g02523 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Aip10g02523 979 Gene3D Tetratricopeptide repeat domain 427 523 IPR011990 GO:0005515
Aip10g02523 979 Gene3D Tetratricopeptide repeat domain 526 624 IPR011990 GO:0005515
Aip10g02523 979 TIGRFAM PPR: pentatricopeptide repeat domain 577 611 IPR002885 -
Aip10g02523 979 TIGRFAM PPR: pentatricopeptide repeat domain 650 672 IPR002885 -
Aip10g02523 979 TIGRFAM PPR: pentatricopeptide repeat domain 679 711 IPR002885 -
Aip10g02523 979 TIGRFAM PPR: pentatricopeptide repeat domain 477 507 IPR002885 -
Aip10g02523 979 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Aip10g02523 979 TIGRFAM PPR: pentatricopeptide repeat domain 751 774 IPR002885 -
Aip10g02523 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Aip10g02523 979 Gene3D Tetratricopeptide repeat domain 23 153 IPR011990 GO:0005515
Aip10g02523 979 Gene3D Tetratricopeptide repeat domain 271 426 IPR011990 GO:0005515
Aip10g02523 979 Gene3D Tetratricopeptide repeat domain 703 863 IPR011990 GO:0005515
Aip10g02523 979 Gene3D Tetratricopeptide repeat domain 154 265 IPR011990 GO:0005515
Aip10g02523 979 SUPERFAMILY TPR-like 206 835 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02523 Aip-Chr10 112007026 112010722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02523 192 940 Glycoside Hydrolase AT3G49170 32.812 9.23e-134 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02523 - - gsj:114408324 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02523 10 112007026 112010722 Aip10g02523 10 112007026 112010722 ECH