Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02368 ATGGAATCGGAGAAAACAAACTTTCAAAGCGTGACGATAGGATCATGTGCAAGACCCTCATGGTCCATCCTCTTTCTCCTCTTCACCCTCATCGCCATCTTCTCCATTCAGCTCTCCACCACCACTCCCTACCTCTTTCCTCCCAACTGGGCCCTCATTCGCCCGCAACGACCCGTCCCTTCCTCCTCCGCATCGGATCCGATCACATGCTCCGGTTTCTTCAGGGCGCTTCCAAAGAGGAAGCTCGTCATGTCCATCAAGGACTTCGGCGGCGTCGGCGACGGCAAAACATCCAATACCGAAGCCTTCAGGAGAGCCATTCGCTACATGCAGCGCTTTCAACACCGTGGTGGGTCCCAGCTTAATATCCCTAACGGAACTTGGCTCACCGCTCCCTTCAATCTCACCTCTGATTTCACCCTTTTCTTGAACCAAGGTGCTCTTCTTTTGGCCTCTCAGGACGTAAAAGAATGGCCTATAATTGAGCCGTTGCCATCTTATGGAAGAGGAAGAGAGAGGTTAGGAGGAAGACATATTAGCCTTATACATGGAAATGGACTCAAGAATGTTATCATCACAGGAGATAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACAAGAGGCCACCTCCTTGAACTAATTAACTCCGATAATGTTCTCATATCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATTCATCCTGTTTACTGCAGAAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACCGATGGCATAGACCCAGACTCAAGCACCAATGTATGCATAGAAGATAACTACATAGAAAGTGGAGATGATCTAGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGCGCATCCTAGCACAAATATCATAGTGAGGAGAGTCTCAGGCACAACCCCAACTTGTTCCGGAGTTGGAATAGGCAGTGAGATGTCCGGAGGAATTTCGAATATAACAATTGAGGGTCTACATGTGTGGGATTCTGCAGCTGGTGTTCGCATGAAATCCGATAAGGGTAGAGGTGGCTATATATCCAATGTTAGCATAAGNNNNNNNNTCAAATGA 1140 0.4711 MESEKTNFQSVTIGSCARPSWSILFLLFTLIAIFSIQLSTTTPYLFPPNWALIRPQRPVPSSSASDPITCSGFFRALPKRKLVMSIKDFGGVGDGKTSNTEAFRRAIRYMQRFQHRGGSQLNIPNGTWLTAPFNLTSDFTLFLNQGALLLASQDVKEWPIIEPLPSYGRGRERLGGRHISLIHGNGLKNVIITGDNGTVDGQGKMWWELWWNRTLEHTRGHLLELINSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAHPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNITIEGLHVWDSAAGVRMKSDKGRGGYISNVSIXXXXK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02368 379 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Aip10g02368 379 PANTHER PECTIN LYASE-RELATED 14 375 - -
Aip10g02368 379 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 14 375 - -
Aip10g02368 379 SMART pbh1 312 334 IPR006626 -
Aip10g02368 379 SMART pbh1 278 310 IPR006626 -
Aip10g02368 379 SMART pbh1 228 250 IPR006626 -
Aip10g02368 379 SMART pbh1 251 277 IPR006626 -
Aip10g02368 379 SMART pbh1 340 361 IPR006626 -
Aip10g02368 379 Gene3D - 80 376 IPR012334 -
Aip10g02368 379 SUPERFAMILY Pectin lyase-like 79 374 IPR011050 -
Aip10g02368 379 Pfam Glycosyl hydrolases family 28 180 373 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02368 Aip-Chr10 107259965 107263433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02368 1 374 Glycoside Hydrolase AT4G33440 69.333 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02368 - - ahf:112715929 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02368 10 107259965 107263433 Aip10g02368 10 107259965 107263433 ECH