Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02367 ATGAGTATGAATTTATGTTCTTCCTTTTTCTTCATGTTCTTCATTGCGACCCCTTTTACCTGCATCATCCATGTTTGCTCAGCAGATTGTGATAATCTACAAGATACATGCCCGACATCTTTGCCAGAAAAGGAAACCATATTCATCAATGGACTACCCTGCAAGAGTAAAGACAACAACACTGCTCAGGATTTCAAGACCGCAGAACTGACAAGGGCTGGTCCTAGAGACAATTTCTTCGGCTCCTCAATGAACATAGTTAGTGCTTCCAAGTTCCCCGGCCTTAACACGGTTGGCATCTCGATTAGTAGAATTGACATTGAAGTGGACGGGATGGTAAACCTTCACAATCATCCGAGAGCCACCGAGATGATCTATGTCAACCAAGGGGTGCTGGCAGCAGCATTTCTTGATACGCAAAACCAGCTTTTCCAAAAGTCTCTGAGAGCAGGCGATGTGTTTGTGATCCCTAAAGGATTGGCTCCCTCAGTGCTTCTACACCTTCTGAGACCACATTGGAGTCGGTAG 528 0.4527 MSMNLCSSFFFMFFIATPFTCIIHVCSADCDNLQDTCPTSLPEKETIFINGLPCKSKDNNTAQDFKTAELTRAGPRDNFFGSSMNIVSASKFPGLNTVGISISRIDIEVDGMVNLHNHPRATEMIYVNQGVLAAAFLDTQNQLFQKSLRAGDVFVIPKGLAPSVLLHLLRPHWSR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02367 175 PRINTS Germin signature 116 136 IPR001929 GO:0030145
Aip10g02367 175 PRINTS Germin signature 146 166 IPR001929 GO:0030145
Aip10g02367 175 SUPERFAMILY RmlC-like cupins 29 160 IPR011051 -
Aip10g02367 175 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 160 - -
Aip10g02367 175 Gene3D Jelly Rolls 28 165 IPR014710 -
Aip10g02367 175 SMART Cupin_1_3 68 170 IPR006045 -
Aip10g02367 175 Pfam Cupin 71 161 IPR006045 -
Aip10g02367 175 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 21 160 - -
Aip10g02367 175 CDD cupin_OxOx 29 160 - -
Aip10g02367 175 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02367 Aip-Chr10 107257875 107258749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02367 24 160 Miscellaneous Gene Families AT3G05930 42.029 9.90e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02367 - - mtr:MTR_3g096330 201.83